Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 255 7e-63 seq4 96.9 4e-15 >seq1 Length=11717239 Score = 255 bits (282), Expect = 7e-63 Identities = 464/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 |||||| || ||||| ||||| | | |||||| || ||| | |||||||||||| Sbjct 2708978 CTTATGCTTTCGTTTGAACTCGTTAACGAAGTGGTTAACGAGGCGGTTATCGAAATCTTC 2709037 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | ||||| || |||||||| | |||||| | Sbjct 2709038 ACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 2709097 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || ||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 2709098 AAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACC 2709157 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| ||||||||||| ||||| || || || || || || || || || || Sbjct 2709158 CTCGACCTTCTTGTCGAGACCGTAGGCGATGGCGGCAGCGGTAGGCTCGTTGATGATTCG 2709217 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| || || || || | ||||| || || || || || || || ||||| Sbjct 2709218 GAGAACGTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCTGAGAGTCGTT 2709277 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| |||||| || || || || Sbjct 2709278 GAAGTAGGCAGGGACGGTGACAACGGCGTTGTTGACGGTCTCACCGAGGTAAGACTCAGC 2709337 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | | || ||| ||||| || | ||| | || ||||| || | | || ||| | Sbjct 2709338 GGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTGAAGGTCTTCTT 2709397 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 ||||| || || ||||| || || | ||| || |||| | ||| | | | Sbjct 2709398 CTCACCCTTGAACTCAACCTCGATGACGGGCTT---GCCAGCCTTGTCGATGATTGTGAA 2709454 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||||||| | ||||||| || | ||||| | ||||| | || Sbjct 2709455 GGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGGCGAACTTGCGACCGATCAATCG 2709514 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | |||||||||||| |||||||| || || || || Sbjct 2709515 CTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACC 2709574 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| ||||| || || || Sbjct 2709575 AATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTACCCTG 2709631 Query 8068 GTCGTTCGCAATAATTTC 8085 |||||| || || || || Sbjct 2709632 GTCGTTGGCGATGATATC 2709649 >seq4 Length=8011673 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/245 (70%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | ||| || || || ||||| || || || ||||| || Sbjct 6434799 ATCGAAATCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCGAGAACCTCGAAGATGCC 6434858 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | || |||||||| || ||||||||||| || || | || | Sbjct 6434859 ATCGTCAATGGAGAGCAGAGAAACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 6434915 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | || ||| | | |||||| || |||||||| |||||||| || || || || | Sbjct 6434916 GATC-TGGCGCTCGCCATCGTTCTTGTCAAGACCGTAAGCGATAGCGGCGGCGGTGGGCT 6434974 Query 7635 CATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 | || | ||| | || |||| || || || ||||| | | || || || || || ||| Sbjct 6434975 CGTTGACAATTCGGAGGACA-TTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGT 6435033 Query 7694 CGTTG 7698 || || Sbjct 6435034 CGCTG 6435038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132768243360