Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 seq4 91.5 2e-13 >seq3 Length=7630574 Score = 187 bits (206), Expect = 3e-42 Identities = 569/868 (66%), Gaps = 21/868 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| ||||||| ||||| | || ||| || || |||||||| ||| Sbjct 1350699 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGT 1350758 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || ||||| | | |||| || || | || || | || Sbjct 1350759 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTGTT 1350818 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| ||| || || | || || |||||| ||| | |||||||| Sbjct 1350819 CAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGGA 1350878 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || |||| || |||| || |||| |||||| || || ||| |||||| Sbjct 1350879 CAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGG 1350938 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||| || | || ||| || | |||| ||| || ||||| || Sbjct 1350939 TGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAA 1350998 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 |||| || | |||||| |||| ||||| || || || ||| ||| || || || || Sbjct 1350999 TGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGT 1351058 Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024 |||| | ||| | |||| || || |||| |||| |||||||||||||| Sbjct 1351059 CGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 1351115 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082 ||| || || | ||||||||||| | || ||||| || | ||||||| |||| Sbjct 1351116 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGC 1351175 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | || || || ||| ||||| ||||| || ||||| ||||||||| | || ||| | Sbjct 1351176 T--CGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGG 1351233 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | ||| | ||| ||||| | || || || || || || ||||| | || | || Sbjct 1351234 AACGGCGAATGGACTCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTACGG 1351292 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 ||| || ||||| || || ||| |||||||||| ||| || || | | || | | Sbjct 1351293 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 1351350 Query 112262 GCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || ||| | || | | ||| | || ||||| || | || || |||||||| | || Sbjct 1351351 ATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACCC 1351409 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| || ||| || | ||||| || |||||||| | ||| || Sbjct 1351410 TTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACCAT 1351469 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || |||||||| || || || ||| | |||| | | |||||| ||||| Sbjct 1351470 CCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGT 1351529 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCC 112466 || ||||| || || | |||| ||| Sbjct 1351530 TTGCAACCTTGCCTCCTTGTCTCTGCCC 1351557 Score = 134 bits (148), Expect = 2e-26 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 102170 |||| || || | |||||| ||||||||||| || ||| | | |||| | | | Sbjct 2145506 TTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAACTC-T 2145448 Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||||||| |||| || | || ||||| |||||||||||||||||| ||| || Sbjct 2145447 TCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 2145388 Query 102231 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || ||| | || | |||||||||||||| || |||||||| ||||| |||| ||||| Sbjct 2145387 TT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAA 2145329 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || |||||||| ||||| || ||| || ||||| Sbjct 2145328 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACTGACTTTGC 2145287 >seq4 Length=8011673 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||||||||| || || |||| ||| || || || | ||| | | | || || Sbjct 1434453 GGCATCAATCTCGTCGATAAAGATGATACAAGGAGCGTTCTTACGACCCTCGGCGAATAG 1434512 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 16182 ||| ||||| ||| | || ||||||||||||||||| || || | | | || || Sbjct 1434513 ATCTCGTACTCGCGAAGGTCCAACACCAACAAACATCTCGACGAATTCGGAGCCGCTCAC 1434572 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1434573 ACT-GAAGAAGGGCACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1434631 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1434632 TACCAGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1434691 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTCTTCCAATTCA-TCTTTGGCGGCGTC 16357 ||||||| ||||| ||||| | ||||| ||| | ||| ||||| || | || Sbjct 1434692 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAACTCCATAATCTCAGTCTTT-GCCTCCTC 1434746 Query 16358 AATCCCCTCAACATCGGTAAAC 16379 || || ||||||| | |||| Sbjct 1434747 AAGACCAGCAACATCCGCAAAC 1434768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742368962880