Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 248 1e-60 seq4 167 3e-36 >seq3 Length=7630574 Score = 248 bits (274), Expect = 1e-60 Identities = 1018/1589 (64%), Gaps = 51/1589 (3%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 |||||||||||||| ||||| |||||| ||||| ||||| | | | | | | | Sbjct 1352324 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 1352269 Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622 || ||| ||||| ||||||||||||| | |||||| || | || |||| ||| Sbjct 1352268 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 1352209 Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679 ||| || ||||| || | |||| | | || | | |||||| | | ||||| || Sbjct 1352208 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 1352152 Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 ||| | | ||||| | | ||| |||||| || || || |||||||| Sbjct 1352151 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 1352092 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || || |||||||||| | ||||| || || || ||||| |||||||| || || Sbjct 1352091 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAAT 1352032 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859 || | || || || ||||| ||||| | ||| |||||||| |||| ||| | || Sbjct 1352031 CTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 1351972 Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919 ||| || ||| || | | |||||||| || || || | || ||| Sbjct 1351971 CTTGACATCCTCTCGGAGGGGTTCCCAATCCCAAAGATCAGAG------GGCTTGACATT 1351918 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979 |||||| || || || | |||||||| ||||| ||||||||||| | ||| | Sbjct 1351917 CCACATGTCAAACTGGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGG 1351858 Query 109980 CCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAA 110039 || || ||| ||| | | || | || || ||||| || || ||||| || Sbjct 1351857 ACCTTCCTCCTTGGCGAGTTGCACAGACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAA 1351798 Query 110040 AATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAA----GACCACAAAGAA 110095 || || |||| |||| ||| | | || ||||| | || ||| ||| Sbjct 1351797 GATTTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAA 1351738 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 |||| || ||||| |||||||| ||||||||||| || || |||||| | Sbjct 1351737 GG----CATCAGCGAGACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGT 1351682 Query 110156 GTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA 110215 ||||| || || ||||| |||| |||||||| | || | ||| | Sbjct 1351681 TACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAA 1351622 Query 110216 CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACA 110274 || | |||| || || || || | | | ||| | | | ||| | || |||| Sbjct 1351621 CAACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTTGATG 1351563 Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334 | ||| |||| | || ||||| ||||| |||| ||| || | || |||| Sbjct 1351562 AAAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTAT 1351503 Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394 || | || || || |||| |||||| || ||| ||| | |||||| || || Sbjct 1351502 TCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTC 1351443 Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454 ||| ||||| |||||| ||||||||| | ||| | ||||| || ||||| | || Sbjct 1351442 TTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCA 1351383 Query 110455 AGAATGGCCTTCCATA-CATCGGCGGCGGGG-ACAGTTGCGTTAGCGAGACCTTCCTCCT 110512 |||||||| | ||| | | || | | | | | | ||||| | | ||| || || Sbjct 1351382 AGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCT 1351325 Query 110513 CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT 110572 ||||||| ||||| |||||||||| | ||||| |||| |||||| || | Sbjct 1351324 CGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGG-GCAT 1351266 Query 110573 T-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | || ||| || | ||| | ||| | || | ||| || | ||||||||| || ||| Sbjct 1351265 TCGTTGGGGCACATGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCA 1351206 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 || ||||| | ||| ||| |||||||| || |||| || | || ||||| Sbjct 1351205 GGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTT 1351146 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGAT 110751 || || || | || || | || || | ||||||||| || || |||| |||| || Sbjct 1351145 CGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCA 1351086 Query 110752 CCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 || | | || ||| |||||| || || || || ||| ||||| || | Sbjct 1351085 CC---AGGTCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGC 1351029 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 ||||| |||| ||| || | ||| |||||| ||||| || || | ||||| Sbjct 1351028 AGCATGGGAACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCA 1350969 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TC 110924 || || |||| | | ||||||||||| ||| ||| ||| ||||| || Sbjct 1350968 CGGATTCGGTGGGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTC 1350909 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||| ||| | || ||||||||||| || |||| | ||| || ||||| || Sbjct 1350908 T-TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGA 1350850 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 || | |||||| | || || || || ||||| | || || |||||||| ||| || Sbjct 1350849 TGAGAGCTGAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AG 1350792 Query 111045 ACCTTG--GGACATCTTGTTGTATGTGTC 111071 | |||| ||||| ||||||||| || Sbjct 1350791 AACTTGCTTGACATGAGGTTGTATGTCTC 1350763 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| ||||| |||||||| || |||| || || Sbjct 2145286 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACC 2145345 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||| ||||||| | ||| || |||||||| Sbjct 2145346 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 2145405 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || || ||||| | ||||||| |||||| Sbjct 2145406 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAA 2145444 >seq4 Length=8011673 Score = 167 bits (184), Expect = 3e-36 Identities = 322/464 (69%), Gaps = 22/464 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || | ||||| | || || ||||| | ||||| ||| | Sbjct 1434268 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 1434327 Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| ||| || | || || | | | ||| ||| ||||||||||| || |||| ||||| Sbjct 1434328 GCAAGGACGACCA--CCTGTTCACGAGTGTTGAAGCCGTCCATTTCCGTAAGAATCTGGT 1434385 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | |||| |||||| |||||||| | | ||| | ||||| | | | | | Sbjct 1434386 TCAGCGTCGCTTCACGTTCATCGTTACCGCCAAAACC-CTTGCCGCTCTCCTGTCGCGCG 1434444 Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 |||| || |||||||| ||||| || | |||||| || ||| ||| ||| Sbjct 1434445 CGACCAATGGCATCAATCTCGTCGATAAAGATGATACAAGGAGCGTTCTTACGACCCTCG 1434504 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || ||||| ||| | ||||||||| || |||||||| ||||| || | Sbjct 1434505 GCGAATAGATCTCGTACTCGCGAAGGTCCAACACCAACAAACATCTCGACGAA-TTCGGA 1434563 Query 11794 GCAGA--ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 || | |||||||| |||||| || ||||||||| || |||| || || | | Sbjct 1434564 GCCGCTCACACTGAA-GAAGGGCACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACG 1434622 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908 ||||||| |||||||| | ||||| | || || || || |||||||||||||| Sbjct 1434623 TCTTACCAGTACCAGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCT 1434682 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || |||| | |||||||| ||| | |||| ||||| |||| Sbjct 1434683 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 1434723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975970551200