Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq3 248 1e-60
seq4 167 3e-36
>seq3
Length=7630574
Score = 248 bits (274), Expect = 1e-60
Identities = 1018/1589 (64%), Gaps = 51/1589 (3%)
Strand=Plus/Minus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566
|||||||||||||| ||||| |||||| ||||| ||||| | | | | | | |
Sbjct 1352324 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 1352269
Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622
|| ||| ||||| ||||||||||||| | |||||| || | || |||| |||
Sbjct 1352268 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 1352209
Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679
||| || ||||| || | |||| | | || | | |||||| | | ||||| ||
Sbjct 1352208 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 1352152
Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739
||| | | ||||| | | ||| |||||| || || || ||||||||
Sbjct 1352151 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 1352092
Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799
|| || |||||||||| | ||||| || || || ||||| |||||||| || ||
Sbjct 1352091 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAAT 1352032
Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859
|| | || || || ||||| ||||| | ||| |||||||| |||| ||| | ||
Sbjct 1352031 CTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 1351972
Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919
||| || ||| || | | |||||||| || || || | || |||
Sbjct 1351971 CTTGACATCCTCTCGGAGGGGTTCCCAATCCCAAAGATCAGAG------GGCTTGACATT 1351918
Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979
|||||| || || || | |||||||| ||||| ||||||||||| | ||| |
Sbjct 1351917 CCACATGTCAAACTGGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGG 1351858
Query 109980 CCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAA 110039
|| || ||| ||| | | || | || || ||||| || || ||||| ||
Sbjct 1351857 ACCTTCCTCCTTGGCGAGTTGCACAGACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAA 1351798
Query 110040 AATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAA----GACCACAAAGAA 110095
|| || |||| |||| ||| | | || ||||| | || ||| |||
Sbjct 1351797 GATTTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAA 1351738
Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155
|||| || ||||| |||||||| ||||||||||| || || |||||| |
Sbjct 1351737 GG----CATCAGCGAGACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGT 1351682
Query 110156 GTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA 110215
||||| || || ||||| |||| |||||||| | || | ||| |
Sbjct 1351681 TACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAA 1351622
Query 110216 CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACA 110274
|| | |||| || || || || | | | ||| | | | ||| | || ||||
Sbjct 1351621 CAACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTTGATG 1351563
Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334
| ||| |||| | || ||||| ||||| |||| ||| || | || ||||
Sbjct 1351562 AAAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTAT 1351503
Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394
|| | || || || |||| |||||| || ||| ||| | |||||| || ||
Sbjct 1351502 TCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTC 1351443
Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454
||| ||||| |||||| ||||||||| | ||| | ||||| || ||||| | ||
Sbjct 1351442 TTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCA 1351383
Query 110455 AGAATGGCCTTCCATA-CATCGGCGGCGGGG-ACAGTTGCGTTAGCGAGACCTTCCTCCT 110512
|||||||| | ||| | | || | | | | | | ||||| | | ||| || ||
Sbjct 1351382 AGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCT 1351325
Query 110513 CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT 110572
||||||| ||||| |||||||||| | ||||| |||| |||||| || |
Sbjct 1351324 CGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGG-GCAT 1351266
Query 110573 T-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631
| || ||| || | ||| | ||| | || | ||| || | ||||||||| || |||
Sbjct 1351265 TCGTTGGGGCACATGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCA 1351206
Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691
|| ||||| | ||| ||| |||||||| || |||| || | || |||||
Sbjct 1351205 GGGATCCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTT 1351146
Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGAT 110751
|| || || | || || | || || | ||||||||| || || |||| |||| ||
Sbjct 1351145 CGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCA 1351086
Query 110752 CCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805
|| | | || ||| |||||| || || || || ||| ||||| || |
Sbjct 1351085 CC---AGGTCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGC 1351029
Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865
||||| |||| ||| || | ||| |||||| ||||| || || | |||||
Sbjct 1351028 AGCATGGGAACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCA 1350969
Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TC 110924
|| || |||| | | ||||||||||| ||| ||| ||| ||||| ||
Sbjct 1350968 CGGATTCGGTGGGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTC 1350909
Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984
| |||| ||| | || ||||||||||| || |||| | ||| || ||||| ||
Sbjct 1350908 T-TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGA 1350850
Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044
|| | |||||| | || || || || ||||| | || || |||||||| ||| ||
Sbjct 1350849 TGAGAGCTGAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AG 1350792
Query 111045 ACCTTG--GGACATCTTGTTGTATGTGTC 111071
| |||| ||||| ||||||||| ||
Sbjct 1350791 AACTTGCTTGACATGAGGTTGTATGTCTC 1350763
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || ||||| ||||| |||||||| || |||| || ||
Sbjct 2145286 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACC 2145345
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| || | ||||| ||||| ||||||| | ||| || ||||||||
Sbjct 2145346 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 2145405
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653
||||| || || ||||| | ||||||| ||||||
Sbjct 2145406 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAA 2145444
>seq4
Length=8011673
Score = 167 bits (184), Expect = 3e-36
Identities = 322/464 (69%), Gaps = 22/464 (5%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || || || || | ||||| | || || ||||| | ||||| ||| |
Sbjct 1434268 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 1434327
Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|||| ||| || | || || | | | ||| ||| ||||||||||| || |||| |||||
Sbjct 1434328 GCAAGGACGACCA--CCTGTTCACGAGTGTTGAAGCCGTCCATTTCCGTAAGAATCTGGT 1434385
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677
| | |||| |||||| |||||||| | | ||| | ||||| | | | | |
Sbjct 1434386 TCAGCGTCGCTTCACGTTCATCGTTACCGCCAAAACC-CTTGCCGCTCTCCTGTCGCGCG 1434444
Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|||| || |||||||| ||||| || | |||||| || ||| ||| |||
Sbjct 1434445 CGACCAATGGCATCAATCTCGTCGATAAAGATGATACAAGGAGCGTTCTTACGACCCTCG 1434504
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793
|||| || || ||||| ||| | ||||||||| || |||||||| ||||| || |
Sbjct 1434505 GCGAATAGATCTCGTACTCGCGAAGGTCCAACACCAACAAACATCTCGACGAA-TTCGGA 1434563
Query 11794 GCAGA--ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
|| | |||||||| |||||| || ||||||||| || |||| || || | |
Sbjct 1434564 GCCGCTCACACTGAA-GAAGGGCACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACG 1434622
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908
||||||| |||||||| | ||||| | || || || || ||||||||||||||
Sbjct 1434623 TCTTACCAGTACCAGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCT 1434682
Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
|| |||| | |||||||| ||| | |||| ||||| ||||
Sbjct 1434683 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 1434723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975970551200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |