Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 4e-15 >seq2 Length=8818970 Score = 96.9 bits (106), Expect = 4e-15 Identities = 335/511 (66%), Gaps = 19/511 (4%) Strand=Plus/Minus Query 154599 GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTAT 154658 || ||||| || | || ||| | | |||| || ||| | || | |||||||||| | Sbjct 1104858 GAGATCACTGGTATGGACGCTACAACTCTACAGCCCAACTCTGGTGCTCAGGGTGAGTTT 1104799 Query 154659 GCAGGACT--GTTAGCAATCCAAGCATACCATCAAGGATCAGGA-GATGATAAAAGAAAT 154715 || || || ||| ||| | || ||||| | ||| || | || || |||| Sbjct 1104798 GCCGGTCTTCGTTGT--ATCAAGGCCTACCA-CGAGGCTCGTTCTGGCGAGAAGCGAAAG 1104742 Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775 || || |||| || | || || || || || || ||||| |||| ||||| || Sbjct 1104741 GTCTGCCTGATCCCTGTTTCTGCCCACGGTACCAACCCTGCCTCGGCTGCTATGGCTGGT 1104682 Query 154776 ATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGA-TGGTAACATAGACATCAAAGATCTA 154832 ||||| || || ||||||||| || | | || ||||||| | ||||| | ||||| Sbjct 1104681 ATGAAGGTCGTCACTGTCAAGTGCGACGGCAAGACTGGTAACCTGGACATTGAGGATCTC 1104622 Query 154833 GAG---AAGAAAGC-AATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCC 154888 || ||| || || || | || || || | ||| ||| | || ||||| Sbjct 1104621 AAGGCCAAGTGTGCCAAGCACGCTGAC----GAGCTTGCTGCTATCATGGTCACCTACCC 1104566 Query 154889 ATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAA 154948 ||||| |||||| ||||| | | |||| || | || | | ||||| || | Sbjct 1104565 CTCTACCTTTGGTGTCTTTGAGCCCGAGATTAAGCAAGTCTGCGATCTTGTTCACGAGCA 1104506 Query 154949 TGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACC 155008 |||||||| || || | || || || || | || || ||| | || || || Sbjct 1104505 TGGTGGTCTCGTCTACATGGACGGTGCCAACATGAACGCCCAGATTGGTCTTTGCTCTCC 1104446 Query 155009 ATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCAC 155067 |||| ||| ||||| ||||| || ||||| ||| | || || || ||||||||||| | Sbjct 1104445 CGGTGA-TATCGGTGCTGATGTCTGCCATCTTAACCTCCACAAGACCTTCTGTATTCCCC 1104387 Query 155068 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 155098 | || ||||| || ||||| || |||||||| Sbjct 1104386 ACGGTGGTGGTGGCCCTGGTGTCGGTCCTAT 1104356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212771039360