Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 >seq2 Length=8818970 Score = 113 bits (124), Expect = 5e-20 Identities = 340/513 (66%), Gaps = 19/513 (4%) Strand=Plus/Minus Query 159274 GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTAT 159333 || ||||| || | || ||| | | |||| || ||| | || | |||||||||| | Sbjct 1104858 GAGATCACTGGTATGGACGCTACAACTCTACAGCCCAACTCTGGTGCTCAGGGTGAGTTT 1104799 Query 159334 GCAGGACT--GTTAGCAATCCAAGCATACCATCAAGGATCAGGA-GATGATAAAAGAAAT 159390 || || || ||| ||| | || ||||| | ||| || | || || |||| Sbjct 1104798 GCCGGTCTTCGTTGT--ATCAAGGCCTACCA-CGAGGCTCGTTCTGGCGAGAAGCGAAAG 1104742 Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450 || || |||| || | || || || || || || ||||| || || | ||||| || Sbjct 1104741 GTCTGCCTGATCCCTGTTTCTGCCCACGGTACCAACCCTGCCTCGGCTGCTATGGCTGGT 1104682 Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGA-TGGCAACATAGACATCAAAGATCTA 159507 ||||| || || ||||||||| || | | || ||| ||| | ||||| | ||||| Sbjct 1104681 ATGAAGGTCGTCACTGTCAAGTGCGACGGCAAGACTGGTAACCTGGACATTGAGGATCTC 1104622 Query 159508 GAG---AAGAAAGC-AATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCC 159563 || ||| || || || | || || || | ||| ||| | || || || Sbjct 1104621 AAGGCCAAGTGTGCCAAGCACGCTGAC----GAGCTTGCTGCTATCATGGTCACCTACCC 1104566 Query 159564 ATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAA 159623 ||||| |||||| ||||| | | || | || | || | ||||||| ||| | Sbjct 1104565 CTCTACCTTTGGTGTCTTTGAGCCCGAGATTAAGCAAGTCTGCGATCTTGTTCACGAGCA 1104506 Query 159624 TGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACC 159683 |||||||| || || | || ||||| || | || || ||| | ||||| || Sbjct 1104505 TGGTGGTCTCGTCTACATGGACGGTGCCAACATGAACGCCCAGATTGGTCTTTGCTCTCC 1104446 Query 159684 ATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 |||| ||| ||||| ||||| || ||||| ||| | || ||||| ||||||||||| | Sbjct 1104445 CGGTGA-TATCGGTGCTGATGTCTGCCATCTTAACCTCCACAAGACCTTCTGTATTCCCC 1104387 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 | || ||||| || ||||| || |||||||||| Sbjct 1104386 ACGGTGGTGGTGGCCCTGGTGTCGGTCCTATTG 1104354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051170597440