Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 324 3e-83 >seq3 Length=7630574 Score = 324 bits (358), Expect = 3e-83 Identities = 1154/1767 (65%), Gaps = 104/1767 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| || || || ||||||||||| ||||| Sbjct 1352459 ACGGTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGTCTTG 1352400 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | | || Sbjct 1352399 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCCATGGTAG- 1352348 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | || || || | ||| || |||||| ||| || ||||| | | Sbjct 1352347 --GGTCCT--TCATG-------TGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACC 1352299 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | |||||| ||||| | | | | || ||| || | ||||||||| |||||| | | Sbjct 1352298 ACGGTCAGCAGCCATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAGTCTTGTACAG 1352239 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | |||||||||||| | ||| || || ||| ||| Sbjct 1352238 AGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAACC---GT-TAT---CAG 1352186 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | || ||||| Sbjct 1352185 CAATG-ATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAGATCCTTGAGA 1352127 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| || || | || || | | ||||| | ||| || Sbjct 1352126 AGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAG 1352067 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||| | || ||||||||| || |||||||| | || ||||| || ||||| Sbjct 1352066 GTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATA 1352007 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTG---CTCGCCGATGAGGCGC-CGAAGCTC 213076 ||||| || || |||||||| | | ||||| || | | | | | || || Sbjct 1352006 GGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGAC----ATCCTCTCGGAGGGG 1351951 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||| ||||| |||| | ||| || ||||||||||||||||| | Sbjct 1351950 TTCCCAATCCCAAAGATCAGAGGG---------CTTGACATTCCACATGTCAAACTGGAG 1351900 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 || || |||| | ||| |||| | | | ||||||||| || | |||||||| Sbjct 1351899 AATACC----CTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGG 1351844 Query 213193 CCAGCTCGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 | || | ||| |||| |||||||| | ||||||||| || || || | | |||| Sbjct 1351843 CGAGTT-GCACAGACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTC 1351785 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| |||||||| | | |||| ||||||| || Sbjct 1351784 AGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGA 1351725 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || || | || ||||||| ||| | || ||| || |||| ||| | | Sbjct 1351724 CCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGC-CTCTTGGAC 1351666 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| |||| ||||||||||||||| | |||||| | |||| ||||| | Sbjct 1351665 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTC 1351606 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACA-------AACTCAGGCA 213483 | ||| | || |||| |||||| | || | || | || |||| Sbjct 1351605 GTGCAGCTTCT------TGAAGTCGTAGCAAGCATCTT-CATAGTTGATGAAAGAGGGCA 1351553 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 | | | | ||| ||||||||||| || ||||| | || | | ||| || ||||||| Sbjct 1351552 GAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCT 1351493 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 | |||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | | Sbjct 1351492 CAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGG-TTGCTCTTGCGATTG 1351434 Query 213604 CAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662 ||| |||||||||||||||| | ||| || |||||| ||||| | | || || | Sbjct 1351433 CAGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCG 1351374 Query 213663 CTCCAGAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACT 213720 ||| || | | ||||||| || || ||| | | | | | |||||||| Sbjct 1351373 TACCAAAGCTTCTGAGCCTTGATAGACTTGC--GACCCTTAC---CCTCTCTCTCGTACT 1351319 Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCG 213779 |||||| || | | ||||||| || || | | | | || || || || | Sbjct 1351318 TTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAG-CAAGACCAGGGCATTCGTTG 1351260 Query 213780 GGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 || |||||||| |||| || ||| || |||| ||| | || |||||| || || |||| Sbjct 1351259 GGGCACATGAGAGTCCATTCGCCGTTCCTCTC-GACACGCTTCATGAAAAGATCAGGGAT 1351201 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 ||| || || ||||||||| | | | ||| ||| ||| ||| || || || Sbjct 1351200 CCAAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAG 1351141 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 ||| || || || |||| ||| |||||||| ||||| | ||||||||| ||||| || || Sbjct 1351140 ATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGG 1351081 Query 213959 CCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015 | |||| || |||||||| || | || ||||||| | ||||| | ||| Sbjct 1351080 TCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGG 1351021 Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GG 214073 || | |||||||| || ||||| || || || || ||||| | ||| | | | Sbjct 1351020 AACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCG 1350961 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 || | | | || || || ||||| || |||||| |||||||| || | | | Sbjct 1350960 GTGGGCGTTTA-AG-CCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGG 1350903 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA-GAAGCAGCTCGAGAG 214192 || || ||| || | |||||||| || | | ||| ||| |||||| ||||| Sbjct 1350902 GTATCGTAGATACCATCAATGCTGTCCTCCTTCA-TATCAACAAGGAAGCATGATGAGAG 1350844 Query 214193 CTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTT 214252 ||| ||| | | || | |||||| | |||||||| ||||| | | |||||| | Sbjct 1350843 CTGAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCT 1350784 Query 214253 AGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 || | ||| |||| ||||||| ||| Sbjct 1350783 TGACATGAGGTTGTATGTCTCCAAGAC 1350757 Score = 194 bits (214), Expect = 3e-44 Identities = 488/733 (67%), Gaps = 23/733 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 2144995 CTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 2145054 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||| ||||||| | || |||||| | || ||| | | || | Sbjct 2145055 CATGAAGTCGAAAGGGTTGGTGGACTTGTACACCT-TCTCGTTGCCGAGAGCCACGAGGA 2145113 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || |||| |||||| | |||||||| | ||||||| || ||||||||| | || | Sbjct 2145114 GGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAG 2145173 Query 48018 -ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| ||||| ||||||| ||| || ||||| || | ||| Sbjct 2145174 CACAAGGG-AGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 2145232 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| |||| || ||| || | ||| | | ||| | Sbjct 2145233 TCCT------GGATCATCTG----TTTGCTG-GCACGTCCCTTGAGGTGAGAGTGGAGGA 2145281 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 ||||||||||| |||| | || || || || |||||| ||||||| |||| | Sbjct 2145282 GACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCA 2145341 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||||||||||| || | || ||||||||||| || | || || | || ||||| Sbjct 2145342 GACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGA 2145401 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || || || || || | || | || |||| ||||||||| Sbjct 2145402 AGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCT 2145461 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | ||||| || |||||||| |||||| || || || || | ||| Sbjct 2145462 GGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2145521 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 |||||| | | | || | | |||| | |||||| || || | ||| Sbjct 2145522 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2145581 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | || ||||| | ||||| || ||||||||| || |||||| | ||||| | Sbjct 2145582 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2145641 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||||| ||| | || ||||||||||| || || || || |||| Sbjct 2145642 TCTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAG 2145701 Query 48549 CAAAGAAGGCAAG 48561 | ||||| ||||| Sbjct 2145702 CGAAGAAAGCAAG 2145714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532753423360