Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3 163 5e-35
>seq3
Length=7630574
Score = 163 bits (180), Expect = 5e-35
Identities = 705/1100 (64%), Gaps = 45/1100 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| |||||||| |||||||||||||| ||||| |||||| || ||| | ||||||||
Sbjct 1351826 GTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAG-CTCACGAGCCTCGGG 1351768
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| |||||||| || || | ||| | || || || || || || || | |||
Sbjct 1351767 AGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGACCTTGAACACCAAGACC 1351708
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
||||| | ||| | | ||||| | || || ||| | || || || |||||||
Sbjct 1351707 AATGGGTCGGTGACGCATGTTGCTGTTACGA--GCCTCTTGGACAGGGTAGTGGTTGACG 1351650
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
||||| | ||||| | || | | |||| | |||||| |||||||| |
Sbjct 1351649 TCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCTTCTTGAAG 1351590
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| | | ||| | | | | || || | |||| | || | | | |
Sbjct 1351589 TCGTAG--CAAG-CATCTTCATAGTTGATG---------AAAGAGGGCAGAGACAAGGAG 1351542
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|| ||||| || || || ||||| || | | || | |||||||| || || |||
Sbjct 1351541 GCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCACAGG 1351482
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTT 221832
||| || |||||| || |||| || || || |||||||||| ||| | |||||
Sbjct 1351481 TTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTG-CAGTGATCCTT 1351423
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||||||||| || || |||||||| ||| ||| | ||||| || ||| || |
Sbjct 1351422 GTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCT- 1351364
Query 221893 TCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945
|||| || | | | | | ||| | | | |||| |||||| |||
Sbjct 1351363 TCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTAC------- 1351311
Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005
||||| | |||| | |||||||| || | || || || || | ||| ||||
Sbjct 1351310 AGAGCCT--CAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACA 1351253
Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
| ||| |||| | ||| | ||| | || |||||| || || |||||||| || |
Sbjct 1351252 TGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1351193
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
|| | || || || | | || ||||||| |||| ||| || | ||||| | |
Sbjct 1351192 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1351133
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
|||| || | ||| |||||||| ||||| || |||| ||| | || || ||||||||||
Sbjct 1351132 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1351073
Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244
| |||||||| || | | | ||| | |||||| | || || | || || |
Sbjct 1351072 TACCACCCTGGTCGA-CGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATA 1351014
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGTTACTG 222301
|||||||| ||| ||||| || ||||| | || ||| | | ||| |
Sbjct 1351013 CCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGT---GG 1350957
Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361
|| | ||| |||||||| || || || |||||||| || ||||||| || ||
Sbjct 1350956 GCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 1350897
Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421
||| || || || ||||||||| | | | || || || || || | |||||
Sbjct 1350896 TAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGC 1350837
Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481
| | || || |||||| |||| ||||| || || || || ||| | || |||||
Sbjct 1350836 TGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATG 1350777
Query 222482 AGATCGTACGTCTCTACGAC 222501
|| | ||| ||||| | |||
Sbjct 1350776 AGGTTGTATGTCTCCAAGAC 1350757
Score = 158 bits (174), Expect = 2e-33
Identities = 382/570 (67%), Gaps = 9/570 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | ||| |||||| || || ||||| |||||
Sbjct 2145840 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2145781
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA---GACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | | | |||||||| | || ||
Sbjct 2145780 TCCAAGGATCTCCACGACTGGAACAACCGTTTGACTTCGGACGAGCAATACTTCATCTCC 2145721
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || ||||| || || || || || ||||| || ||| ||
Sbjct 2145720 CACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAGCGA 2145661
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| | | || || ||| | ||||| || ||||| ||||||||||| ||
Sbjct 2145660 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATG 2145601
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGC 25772
|| || | ||||| || || || || | ||| || ||||| | ||| ||
Sbjct 2145600 GAGAACATCCACTCCGAAACATACTCCCTCCTCATCGAT-ACCTACATCAAGGACCCTGC 2145542
Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGGCG 25830
| || | | || || || ||| | || ||| || || ||||| | |||||||
Sbjct 2145541 CCAGCGTACATAC-CTCTTCAACGCCGTTGA-CACTATTCCTTGCATCCGAAAGAAGGCG 2145484
Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890
|||||||| |||||| | | ||| | || | |||| |||| || || ||
Sbjct 2145483 GATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTGCT 2145424
Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950
|||||||| || ||||| ||||| ||||||||| | ||||| |||||||||||||||||
Sbjct 2145423 TTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAG 2145364
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| || |||||| || ||| |||||||||||||||||| | || ||||||
Sbjct 2145363 AAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGGGT 2145304
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
|| |||| || |||||||| || ||| ||
Sbjct 2145303 CTTCACACTGACTTTGCCTGTCTCCTCCAC 2145274
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | ||||| | ||| || ||| | ||
Sbjct 1352118 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 1352059
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|| | || |||||||||||| || ||||| | || |||||||| ||||| || || ||
Sbjct 1352058 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAAC 1351999
Query 221236 CAGCAGACTGTTGCG 221250
||||||||||||||
Sbjct 1351998 GAGCAGACTGTTGCG 1351984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844753557760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |