Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 163 5e-35 >seq3 Length=7630574 Score = 163 bits (180), Expect = 5e-35 Identities = 705/1100 (64%), Gaps = 45/1100 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| |||||||||||||| ||||| |||||| || ||| | |||||||| Sbjct 1351826 GTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAG-CTCACGAGCCTCGGG 1351768 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| |||||||| || || | ||| | || || || || || || || | ||| Sbjct 1351767 AGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGACCTTGAACACCAAGACC 1351708 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | || || ||| | || || || ||||||| Sbjct 1351707 AATGGGTCGGTGACGCATGTTGCTGTTACGA--GCCTCTTGGACAGGGTAGTGGTTGACG 1351650 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| | || | | |||| | |||||| |||||||| | Sbjct 1351649 TCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCTTCTTGAAG 1351590 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | ||| | | | | || || | |||| | || | | | | Sbjct 1351589 TCGTAG--CAAG-CATCTTCATAGTTGATG---------AAAGAGGGCAGAGACAAGGAG 1351542 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| || || || ||||| || | | || | |||||||| || || ||| Sbjct 1351541 GCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCACAGG 1351482 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTT 221832 ||| || |||||| || |||| || || || |||||||||| ||| | ||||| Sbjct 1351481 TTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTG-CAGTGATCCTT 1351423 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||||||||| || || |||||||| ||| ||| | ||||| || ||| || | Sbjct 1351422 GTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCT- 1351364 Query 221893 TCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945 |||| || | | | | | ||| | | | |||| |||||| ||| Sbjct 1351363 TCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTAC------- 1351311 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | |||| | |||||||| || | || || || || | ||| |||| Sbjct 1351310 AGAGCCT--CAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACA 1351253 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | ||| |||| | ||| | ||| | || |||||| || || |||||||| || | Sbjct 1351252 TGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1351193 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 || | || || || | | || ||||||| |||| ||| || | ||||| | | Sbjct 1351192 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1351133 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | ||| |||||||| ||||| || |||| ||| | || || |||||||||| Sbjct 1351132 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1351073 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 | |||||||| || | | | ||| | |||||| | || || | || || | Sbjct 1351072 TACCACCCTGGTCGA-CGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATA 1351014 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGTTACTG 222301 |||||||| ||| ||||| || ||||| | || ||| | | ||| | Sbjct 1351013 CCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGT---GG 1350957 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 || | ||| |||||||| || || || |||||||| || ||||||| || || Sbjct 1350956 GCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 1350897 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| || || || ||||||||| | | | || || || || || | ||||| Sbjct 1350896 TAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGC 1350837 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | | || || |||||| |||| ||||| || || || || ||| | || ||||| Sbjct 1350836 TGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATG 1350777 Query 222482 AGATCGTACGTCTCTACGAC 222501 || | ||| ||||| | ||| Sbjct 1350776 AGGTTGTATGTCTCCAAGAC 1350757 Score = 158 bits (174), Expect = 2e-33 Identities = 382/570 (67%), Gaps = 9/570 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||| || || ||||| ||||| Sbjct 2145840 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2145781 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA---GACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | | | |||||||| | || || Sbjct 2145780 TCCAAGGATCTCCACGACTGGAACAACCGTTTGACTTCGGACGAGCAATACTTCATCTCC 2145721 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| || || || || || ||||| || ||| || Sbjct 2145720 CACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAGCGA 2145661 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| | ||||| || ||||| ||||||||||| || Sbjct 2145660 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATG 2145601 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGC 25772 || || | ||||| || || || || | ||| || ||||| | ||| || Sbjct 2145600 GAGAACATCCACTCCGAAACATACTCCCTCCTCATCGAT-ACCTACATCAAGGACCCTGC 2145542 Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGGCG 25830 | || | | || || || ||| | || ||| || || ||||| | ||||||| Sbjct 2145541 CCAGCGTACATAC-CTCTTCAACGCCGTTGA-CACTATTCCTTGCATCCGAAAGAAGGCG 2145484 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||||| |||||| | | ||| | || | |||| |||| || || || Sbjct 2145483 GATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTGCT 2145424 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 |||||||| || ||||| ||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 2145423 TTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAG 2145364 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| || ||| |||||||||||||||||| | || |||||| Sbjct 2145363 AAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGGGT 2145304 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || |||| || |||||||| || ||| || Sbjct 2145303 CTTCACACTGACTTTGCCTGTCTCCTCCAC 2145274 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | ||||| | ||| || ||| | || Sbjct 1352118 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 1352059 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || |||||||||||| || ||||| | || |||||||| ||||| || || || Sbjct 1352058 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAAC 1351999 Query 221236 CAGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 1351998 GAGCAGACTGTTGCG 1351984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844753557760