Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=8818970 Score = 114 bits (126), Expect = 1e-20 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 139271 ACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGAT 139330 ||| || || | || ||||| ||||||| || || || || ||||| || |||||||| Sbjct 1105501 ACCGTGGTAGACGGCGTAGAAAGCAGACATGTTGGCAAGAAGAGCTTGGGCAGTGCAGAT 1105560 Query 139331 GTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTA 139390 ||| ||||| || || || | || ||| |||||||| | ||| || || || | | Sbjct 1105561 GTTGCTGGTAGCCTTTTCACGTCGAATGTGCTGCTCACGAGTCTGGAGAGCAAGACGAAG 1105620 Query 139391 TGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTT 139450 ||||| || || | ||| ||| ||| || | | || || ||||| | ||| Sbjct 1105621 AGCAGGCTTTCCGAGACGATCCTTGGACACACCGACGAGACGACCGGGGATCTTGCGCTT 1105680 Query 139451 ATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACC 139510 ||||| || | ||| |||||||| ||||| || ||||| ||||| |||| ||||| ||| Sbjct 1105681 GTACTTCTCAGATGTGGCAAAGAAAGCAGCGTGGGGACCACCGTAGCCCAGAGGAACACC 1105740 Query 139511 AAA 139513 || Sbjct 1105741 GAA 1105743 Score = 91.5 bits (100), Expect = 2e-13 Identities = 335/513 (65%), Gaps = 19/513 (4%) Strand=Plus/Plus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 |||||||||| || ||||| || ||||| || || ||||||||||| ||||| || | | Sbjct 1104354 CAATAGGACCGACACCAGGGCCACCACCACCGTGGGGAATACAGAAGGTCTTGTGGAGGT 1104413 Query 138247 TTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTT 138305 | ||||| || ||||| ||||| ||| |||| || ||||| | ||| || || Sbjct 1104414 TAAGATGGCAGACATCAGCACCGATA-TCACCGGGAGAGCAAAGACCAATCTGGGCGTTC 1104472 Query 138306 AGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGT 138365 | || ||||| || | || || ||||||||| || ||||| | | || | || Sbjct 1104473 ATGTTGGCACCGTCCATGTAGACGAGACCACCATGCTCGTGAACAAGATCGCAGACTTGC 1104532 Query 138366 CTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGT 138425 | || | | ||||| |||||| || || || || || | ||| ||| | || Sbjct 1104533 TTAATCTCGGGCTCAAAGACACCAAAGGTAGAGGGGTAGGTGACCATGATAGCAGCAAGC 1104592 Query 138426 TCAAATGTATTCATGATT-GCTTTCTT---CTCTAGATCTTTGATGTCTATGTTGCCA-T 138480 || || | || || || ||| || ||||| | ||||| | ||| ||| | Sbjct 1104593 TC----GTCAGCGTGCTTGGCACACTTGGCCTTGAGATCCTCAATGTCCAGGTTACCAGT 1104648 Query 138481 CAT--CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATT 138538 | | | || ||||||||| || || ||||| || ||||| | || ||||| || Sbjct 1104649 CTTGCCGTCGCACTTGACAGTGACGACCTTCATACCAGCCATAGCAGCCGAGGCAGGGTT 1104708 Query 138539 AGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTT 138597 || || || || || | || ||||| || || |||| || || | || ||| Sbjct 1104709 GGTACCGTGGGCAGAAACAGGGATCAGGCAGACCTTTCGCTTCTCGCCAGAACGAGCCTC 1104768 Query 138598 GATGATATGCTTGGATTGCTAAC--AGTCCTGCATACTCACCCTGTGATCCTGCGTTAGG 138655 | || || || | ||| ||| || || ||| |||||||||| | || | ||| || Sbjct 1104769 G-TGGTAGGCCTTGAT--ACAACGAAGACCGGCAAACTCACCCTGAGCACCAGAGTTGGG 1104825 Query 138656 TTGTAATGATATAGAATCAAAACCTGTGATATC 138688 |||| | | ||| || | ||| ||||| || Sbjct 1104826 CTGTAGAGTTGTAGCGTCCATACCAGTGATCTC 1104858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998371050080