Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 196 6e-45 >seq3 Length=7630574 Score = 196 bits (216), Expect = 6e-45 Identities = 1039/1637 (63%), Gaps = 43/1637 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| ||||||| ||||| | || ||| || || || ||||| ||| Sbjct 1350699 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGT 1350758 Query 75271 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| || ||||| |||| | | ||| ||| || | || || | Sbjct 1350759 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCGAGCCCCACTTTG 1350816 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || ||||| ||| || ||| | || ||||||||| | | | |||||| Sbjct 1350817 TTCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAG 1350876 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 1350877 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 1350936 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || |||||||| | || ||| | | |||| | ||| || || || Sbjct 1350937 GGTGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 1350996 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 |||||| || | |||||| |||| ||||| || || || ||| ||| || || || Sbjct 1350997 AATGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 1351056 Query 75569 GTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCATGG 75622 || | || ||| || |||| | || || |||| ||||| | || |||||| Sbjct 1351057 GTCGACCA---GGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGG 1351113 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || ||||| || | ||||||||||| | ||| ||||| || | || |||| || Sbjct 1351114 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGC 1351173 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | | || || || | || ||||| || || |||||||||||||| || ||| | Sbjct 1351174 GCTCGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGG 1351233 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 || ||||| |||| | || || || || || || ||||| | ||| || Sbjct 1351234 AACGGCGAATGGACTCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTACGG 1351292 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTA-GAGCCAATGCGACT 75859 ||| || ||||| || || ||| |||||| || ||| ||||||| | | | || | | Sbjct 1351293 TGACGAATTTGAGGCTCTGTACGAAAAGTACGA-GAGAGAGGGTAAGGGTC---GCAAGT 1351348 Query 75860 GTACCA-GCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 || || | | | || | ||||| | || ||||| | | ||||| |||||||||| | Sbjct 1351349 CTATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACC 1351408 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | | ||||| ||||||||| || || ||||| ||||||||||| | || || | Sbjct 1351409 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACCA 1351468 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 || ||||| || || ||||| || || | || ||| | |||||| |||| Sbjct 1351469 TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTG 1351528 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTCGCACTT 76094 ||||||| | || || | | || || | ||| ||||||| || || | Sbjct 1351529 TTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTCATCAACTATGAAGATGCTTGC---T 1351585 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 || | | || || || || |||| | ||||| | ||| | ||| ||| Sbjct 1351586 ACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAACAAGATCA 1351645 Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | ||| || || || || | || || || || ||||| ||| |||| | Sbjct 1351646 TCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCACCGACCCA 1351705 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATT 76274 ||||| | ||||||||||||||||| |||| || || |||| | ||||| | Sbjct 1351706 TTGGTCTTGGTGTTCAAGGTCTCGCTGATGCCTTCCTTGCCCTCCGCATGCCCTTTGAGT 1351765 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 | || || ||| |||| | ||||| || ||||| || || || |||| Sbjct 1351766 CTCCCGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCATGCTGCCCTTA 1351825 Query 76335 AGGCGAGTTGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 || |||| || | || | | ||||| |||| || || ||||||| || Sbjct 1351826 CCACG-TCTGTGCAACTCGCCAAGGAGGAAGGTCCCTACTCCACCTTCAAGGGTTCCCCT 1351884 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACG 76451 || || | || | || |||||||| |||| |||| || || || || | | | | Sbjct 1351885 GCCTCTGAGGGTATTCTCCAGTTTGACATGT-GGAATGTCAAGCC-CTCTGATCTTTGGG 1351942 Query 76452 ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 76511 | ||||| ||| || ||||| | ||| | || |||||||| | | | Sbjct 1351943 ATTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTG 1352002 Query 76512 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCAT 76571 | || ||||| || ||| ||| | || || | || || || || |||||||| || | Sbjct 1352003 CTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGCCTT 1352062 Query 76572 ACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGC 76631 |||| | |||||||||| | || ||| || || ||||| |||||||| Sbjct 1352063 ACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCT 1352122 Query 76632 ACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA--- 76688 || |||| || || | || ||||| |||||| | | ||||||| | | || Sbjct 1352123 GGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGTCCGATGCTATGAAGAACCGCATCA 1352182 Query 76689 -TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || ||| | | ||||| || || || ||| | | ||||| | || |||||| | Sbjct 1352183 TTGCTGATAAC----GGTTCTATCCAGAACATCCCCAACATCCCTGCCGAGATCAAGGCT 1352238 Query 76748 CTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGT 76807 || ||| || |||||||| || | | | || | | ||||| || || ||| Sbjct 1352239 CTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAGATGGCTGCTGACCGT 1352298 Query 76808 GGTCGCTTCATTGATCA 76824 ||| |||||||||||| Sbjct 1352299 GGTGCCTTCATTGATCA 1352315 Score = 113 bits (124), Expect = 5e-20 Identities = 334/507 (66%), Gaps = 26/507 (5%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079 ||||||||| | ||||| || |||| | |||| || ||| ||||| || || Sbjct 2145492 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAACTCT---TCCTTTGCTCAG 2145436 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTAT 65138 || ||| |||| ||||| || ||||||||||||||| ||| | || ||| | || Sbjct 2145435 CGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCTTCCAT 2145377 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | ||| | |||||||| || |||||||| || || |||| || || || || ||||| Sbjct 2145376 CTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTC 2145317 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAG 65258 || ||||||||||| ||| || |||||| || ||| || | || | || | Sbjct 2145316 TCGTGATGAGGGTCTTCACACTGACTTTGCC-TG--TCTCCTCCACTCTCACCTCAAGGG 2145260 Query 65259 AC---CCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 || ||| | | | ||||| | ||| | | || || ||| |||||| | | Sbjct 2145259 ACGTGCCAGCAAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGA 2145200 Query 65316 GTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGA 65375 |||| || || || ||||| ||| ||| |||| |||||||| | ||| | Sbjct 2145199 GTTCCTCACCGAGGCTCTCCCTTGTGCTCTGCTCGGCATGAACTCCAACCTCATGAAGCA 2145140 Query 65376 GTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCACCCA-----T 65429 |||||| || | || | ||||| |||||| || | | | || | | | Sbjct 2145139 GTACATCGAATTCGTCGCCGATCGCCTCCTC------GTGGCTCTCGGCAACGAGAAGGT 2145086 Query 65430 TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAA 65489 | || | | || || || ||||| ||||| ||||| ||||| || |||||||| Sbjct 2145085 GTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAA 2145026 Query 65490 CTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||| |||||||| |||| ||||| Sbjct 2145025 CTTCTTCGAGAAGCGCGTTGCTGACTA 2144999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569570171520