Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 167 7e-36 seq1 131 5e-25 >seq3 Length=7630574 Score = 167 bits (184), Expect = 7e-36 Identities = 262/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| ||||| | ||||| |||||| || ||||| || |||| Sbjct 2145638 CCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACAT 2145579 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || || ||||| |||||||| || | | |||| | ||| || | |||||| Sbjct 2145578 ACTCCCTCCTCATCGATACCTACATCAAGGACCCTGCCCAGC-GTACATACCTCTTCAAC 2145520 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||| || | ||||||| || |||||| | || ||||| || |||||||||| Sbjct 2145519 GCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAG 2145460 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| | |||||| ||||| ||||||||||||| || ||||| || || Sbjct 2145459 GACAAGAACTCTTCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTC 2145400 Query 133544 ttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || || ||||| || |||||||| | | ||||| || Sbjct 2145399 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCT 2145341 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTT 133662 | | ||||| ||||| || ||||| | || |||| |||||||| || |||||| | | Sbjct 2145340 GAGCTTTTCCAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGTCT 2145281 Query 133663 ACTTCACTCT 133672 || |||||| Sbjct 2145280 CCTCCACTCT 2145271 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/173 (72%), Gaps = 11/173 (6%) Strand=Plus/Minus Query 154889 TGTAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCAT 154948 ||||| ||||||||||||||||| || || | |||||| || || || |||||||| Sbjct 1352065 TGTAA--GGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCAT 1352008 Query 154949 GGGAGCACATAACAGACTGTTCCTGATTCCGTG---CTTAACAATTTTCGCCCGCAGAGT 155005 |||||| | ||||||||| | ||| ||||| ||| ||| | | | || || | Sbjct 1352007 AGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACA---TCCTCTCGGAGGGG 1351951 Query 155006 ATCCCAATCATACCTATCACTACAAGGCTTTTCATTCCATAGGTCAAACTGGA 155058 |||||||| || | | | | ||||| ||||||| | ||||||||||| Sbjct 1351950 TTCCCAATC---CCAAAGATCAGAGGGCTTGACATTCCACATGTCAAACTGGA 1351901 >seq1 Length=11717239 Score = 131 bits (144), Expect = 5e-25 Identities = 387/588 (66%), Gaps = 14/588 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| |||| || Sbjct 8551340 ATGAGTCCACAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAATAGACGC 8551281 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || |||||||| | |||||| |||||||| ||||| || ||||| Sbjct 8551280 TCCTTCAGGAAGGCAGCAGCACCGTGAGCAATCATGCAATCACGTTCCATCTCTCCGAAT 8551221 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| ||||| | ||||||| ||||||| || || | | | | ||| Sbjct 8551220 CGCAGACCACCATCTCGAGCACGACCCTCGACAGGCTGTCGGGTCATAATCTGAACGGGA 8551161 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| || | ||||| || ||||| |||||| ||| Sbjct 8551160 CCACGGGCACGAGCGTGGATCTTGTCGTCCACCATGTGACGAAGACGTTGGTAGTATGTA 8551101 Query 251647 GGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 || |||| ||||| || || | | | | ||| || || | || ||||| || | Sbjct 8551100 GGTCCGAAGAAGA--CTTGAGCACGGAGCTTACGTCCGGTGTGACCATTGTACATGACCT 8551043 Query 251705 CGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCT 251761 | || ||||| |||||| ||| || | | ||||| | | | | Sbjct 8551042 CAAAACCTCGAGATTGATAACCGTGTTTTCTCAGAATATCTGACACGGAGT---CGACGG 8550986 Query 251762 TGA-ATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820 ||| || | || || || |||| || | | |||| | | | || || | Sbjct 8550985 TGACATCAGTGAATGGTGTTG-CGTCGCCCTCCATACCCTCCAGTGTTGAGACCTTACTC 8550927 Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 ||||| ||| ||| ||||| || ||||||||| |||||||| || || |||||| Sbjct 8550926 AAAAGACACTCAATCAAATGGGCAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATG 8550867 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTT 251939 || ||||| || |||| || || |||| |||||||||| | || ||| | Sbjct 8550866 ATAATGTCAGGAGTCAGGCCCTCTCTGCTGAAAGGCATATCCTCCT-GTCGATAGGTAAC 8550808 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| |||||||||||| |||||| |||||||| Sbjct 8550807 ACCGATTGTACCCTTTTGACCGTGACGAGAAGCGAACTTGTCACCAAT 8550760 Score = 122 bits (134), Expect = 3e-22 Identities = 205/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627 || |||||| | | ||||| || || |||||||| ||||||||| || || || || Sbjct 2986937 AAGGTCTTCAAGAGCCTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGAC 2986878 Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 || |||||||| ||||| | |||||| |||| || |||||||| | || || Sbjct 2986877 CGCAGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGGGT 2986818 Query 302688 TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTT 302747 || || | | | ||| |||| ||||||||||| || ||||| |||| || ||| Sbjct 2986817 AAGACCACGTAGGTAAGAGTTCTCGACGAAACCACGGGCTTCGGGAGAATAATCATCCTT 2986758 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 ||| || || ||||| || | | || | || | || ||||||||||| |||||| | Sbjct 2986757 GGTGAAATGAGGCAGAGTACGATACTTGAAACCAAAGGGAATACGCTTTCCTTCAACGAT 2986698 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||| || | || | |||| || ||||| || | | | |||||||| || Sbjct 2986697 TTGCTGACCGACAAGCGCAGTCATTTGTGAAATGTTGATAGAAGAACCCTTGGAACC 2986641 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 2987710 AGAATTTCTTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 2987654 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||| | ||||||||||| || || || | Sbjct 2987653 AAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 2987594 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 2987593 ACACCAACCATTTCACCGGG 2987574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817524569348