Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 125 9e-23 seq3 122 1e-21 seq1 102 1e-15 >seq4 Length=8011673 Score = 125 bits (138), Expect = 9e-23 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | ||||||||||| |||||||| || ||||| | || |||||| | || |||||| Sbjct 1792767 GCCTCTAACTACCTCGATATCAAGCCCCTTCTCGACGTCGGATGCAAGACCGTCGCCAAC 1792708 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||| | ||||||||||||||||||||||| || |||| Sbjct 1792707 ATGATCAAGGGCAAGGCACCCGAGGAGATCCGCAAGACCTTCAATATCA 1792659 >seq3 Length=7630574 Score = 122 bits (134), Expect = 1e-21 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| || || || |||||||| || | |||||||| Sbjct 1351065 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGA 1351006 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | ||| | ||| || | ||| ||| ||||| Sbjct 1351005 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTAAGCC 1350946 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || |||||||| || || Sbjct 1350945 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1350886 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || || ||||| || ||| || || || | || || Sbjct 1350885 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGGGTACC 1350826 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| | ||||| |||| ||||| |||| | |||||| || ||| || Sbjct 1350825 GGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 1350766 Score = 118 bits (130), Expect = 1e-20 Identities = 177/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | |||||| |||||| |||||||||||||| | || ||||| Sbjct 2144990 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 2145049 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | | || Sbjct 2145050 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCACG 2145109 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| |||||||| || ||||||||||| ||||||| || ||||||||||| Sbjct 2145110 AGGAGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 2145169 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| | | ||||| | ||| || ||||| ||| ||| Sbjct 2145170 AGAGCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATA 2145229 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 2145230 ATGT-CCTGG 2145238 Score = 93.3 bits (102), Expect = 5e-13 Identities = 187/269 (70%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| || || ||||||||||| |||||||||||||| |||||| | || Sbjct 2145326 TCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAG 2145383 Query 869261 AAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAA 869318 || || ||| ||| ||||| ||||| ||||| ||||| | | || |||| |||| Sbjct 2145384 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 2145443 Query 869319 AGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCA 869375 || | ||| | |||| | |||||| || ||||| || ||||| || | | Sbjct 2145444 AG--GAAGAG----TTCTTGTCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGA 2145497 Query 869376 CCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACA 869434 | || | ||||| | |||| ||||||| || | | ||| |||||||||| Sbjct 2145498 TGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATG 2145556 Query 869435 TAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||| ||||| ||||| || || || || Sbjct 2145557 TAGGTATCGATGAGGAGGGAGTATGTTTC 2145585 >seq1 Length=11717239 Score = 102 bits (112), Expect = 1e-15 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| |||||||| || || ||||| ||||| | ||| | || ||||||||| Sbjct 5470961 GACAGCACTGGCGGCACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 5471020 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| || | Sbjct 5471021 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCTGTC 5471080 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| || ||| | ||| ||| || Sbjct 5471081 AAGGCCTTTGAGCTAGGCTCCGGCTT 5471106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138871741268