Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 150 3e-30 seq4 125 1e-22 >seq3 Length=7630574 Score = 150 bits (166), Expect = 3e-30 Identities = 224/311 (72%), Gaps = 15/311 (5%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||| ||||| || || ||||||||||| |||||||||||||| ||||||| | | Sbjct 2145326 TCGTTGGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAA--G 2145383 Query 794422 AAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479 || || ||| ||| ||||| ||||| ||||| ||||| | || || |||| |||| Sbjct 2145384 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 2145443 Query 794480 A---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCA 794536 | || || | | ||| |||||| || ||||| || ||||| || | | Sbjct 2145444 AGGAAGAGTTCTTGTCCTG------GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGA 2145497 Query 794537 CCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACG 794595 | || | ||||| | |||| ||||||| || | || | | |||||||||| | Sbjct 2145498 TGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG-CTGGGCAGGGTCCTTGATG 2145556 Query 794596 TAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAG 794655 ||||| ||||||||||| ||||| || || ||||||||||| || || ||||||||| Sbjct 2145557 TAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 2145616 Query 794656 CCATAAAAGCA 794666 ||||| ||||| Sbjct 2145617 CCATAGAAGCA 2145627 Score = 125 bits (138), Expect = 1e-22 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 |||||| |||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 2145008 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 2145067 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | | ||| ||||||| ||||| | | | || ||||| ||||||||| Sbjct 2145068 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCACGAGGAGGCGATCGGCGACG 2145127 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095 ||||| |||||||| ||||||| || ||||||||||| || || || ||| || | Sbjct 2145128 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAGCACAAGGG-AGAGC 2145186 Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 |||| ||| ||||| | ||| || ||||| ||| |||| || | ||||| Sbjct 2145187 CTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 2145238 >seq4 Length=8011673 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | ||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| Sbjct 1792767 GCCTCTAACTACCTCGATATCAAGCCCCTTCTCGACGTCGGATGCAAGACCGTCGCCAAC 1792708 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||| | |||||||| |||||||||||||| || |||| Sbjct 1792707 ATGATCAAGGGCAAGGCACCCGAGGAGATCCGCAAGACCTTCAATATCA 1792659 Score = 104 bits (114), Expect = 4e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 5138165 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 5138106 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||||||||| |||| Sbjct 5138105 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 5138074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245974501756