Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq2 122 6e-23 seq1 98.7 6e-16 >seq3 Length=7630574 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 6114384 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 6114443 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 6114444 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 6114503 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 6114504 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 6114563 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || |||||||||||||| || || ||||||||||| Sbjct 6114564 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATGAT 6114598 >seq2 Length=8818970 Score = 122 bits (134), Expect = 6e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||||||||| ||||| || ||| | || | || Sbjct 2562764 AGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGGCCGTCC 2562823 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| ||| |||||||| | || | |||||||| || Sbjct 2562824 TCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 2562883 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | |||||| |||| ||| || Sbjct 2562884 TGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGAT 2562939 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||| ||||| Sbjct 2562940 GGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| ||| |||||||| ||||| ||||| || ||| | || | || Sbjct 2562482 AGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 2562541 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 2562542 TCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 2562601 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| |||||| Sbjct 2562602 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTC 2562661 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || || | |||||| || Sbjct 2562662 TTGCCGGTCAAGGTCTTGAC 2562681 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || ||| | || |||| || || ||||| |||||||| Sbjct 2563012 CTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 2563071 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||| ||||| || | || | ||||||||||| | || || ||||| | Sbjct 2563072 AATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGAC--A 2563129 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| | ||| || || | ||| || ||||| || || | ||||| Sbjct 2563130 T--TGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCT 2563187 Query 34962 TTACAAAGATCTGCATG 34978 | || |||||||||||| Sbjct 2563188 TGACGAAGATCTGCATG 2563204 >seq1 Length=11717239 Score = 98.7 bits (108), Expect = 6e-16 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| | || |||| || || ||||| |||||||||| Sbjct 6373628 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 6373569 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| ||||| || | || | ||||||||||| | || || ||||| || Sbjct 6373568 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 6373512 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || | |||||| || | ||| |||||||| ||||| |||||||| Sbjct 6373511 -TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 6373453 Query 34964 ACAAA 34968 || || Sbjct 6373452 ACGAA 6373448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692784122476