Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-19 >seq1 Length=11717239 Score = 114 bits (126), Expect = 1e-19 Identities = 262/392 (67%), Gaps = 3/392 (1%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||||| || || | ||||| |||||||| | ||| || ||||| ||||| Sbjct 2708127 TTCTCAACGGCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATC 2708186 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || || | ||||||| ||||| || | | || | |||| || Sbjct 2708187 TGGGGAACACCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTG 2708246 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || ||| | || ||||||||| | | |||||| || ||| || || Sbjct 2708247 TTGTCCTTGGTGCGCTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTG 2708306 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || || | || | || || ||| || || ||||| || ||||| | || Sbjct 2708307 TCGGAGAAGGTAGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATG 2708366 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | |||||||| ||||||||||| || || | ||| ||||| ||||| | ||| |||| Sbjct 2708367 AGCTTGGTCATCATACCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCGACGTCAAGG 2708426 Query 281717 AGGACAATAT--TTTGAAGTTTTTC-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 |||| ||| | || | || || | | || | |||| |||||||| || || | | Sbjct 2708427 AGGAGAATCTCGTTGGTAGCCTTGCTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACA 2708486 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATT 281805 || ||||| || |||||||| |||||||| || Sbjct 2708487 GCGGCACCGTAGGCAACAGCCTCATCAGGGTT 2708518 Score = 113 bits (124), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | ||||| || |||||||| |||||||||||| | ||||||||| Sbjct 2985384 GGTAAGGAAGGTCGTCTCAGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 2985443 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || | ||| | || || ||||| |||| | ||| Sbjct 2985444 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCACGAGGTCGGTGTGCCTCGAAGTATC 2985503 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 || | || ||||||| | ||| | |||||| Sbjct 2985504 GCCAGAACCCTTACTTATCCCGAGACTGTAAC 2985535 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| | ||||||||||| |||||| | ||| |||| || | || ||| Sbjct 2986827 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 2986886 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| |||||||| ||||| || | | |||||| |||||||| Sbjct 2986887 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 2986933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740630203616904