Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 1e-19
>seq1
Length=11717239
Score = 114 bits (126), Expect = 1e-19
Identities = 262/392 (67%), Gaps = 3/392 (1%)
Strand=Plus/Plus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
|| ||| |||||| || || | ||||| |||||||| | ||| || ||||| |||||
Sbjct 2708127 TTCTCAACGGCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATC 2708186
Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536
|| || || || | ||||||| ||||| || | | || | |||| ||
Sbjct 2708187 TGGGGAACACCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTG 2708246
Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596
|| || || ||| | || ||||||||| | | |||||| || ||| || ||
Sbjct 2708247 TTGTCCTTGGTGCGCTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTG 2708306
Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656
|| || | || | || || ||| || || ||||| || ||||| | ||
Sbjct 2708307 TCGGAGAAGGTAGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATG 2708366
Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716
| |||||||| ||||||||||| || || | ||| ||||| ||||| | ||| ||||
Sbjct 2708367 AGCTTGGTCATCATACCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCGACGTCAAGG 2708426
Query 281717 AGGACAATAT--TTTGAAGTTTTTC-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773
|||| ||| | || | || || | | || | |||| |||||||| || || | |
Sbjct 2708427 AGGAGAATCTCGTTGGTAGCCTTGCTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACA 2708486
Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATT 281805
|| ||||| || |||||||| |||||||| ||
Sbjct 2708487 GCGGCACCGTAGGCAACAGCCTCATCAGGGTT 2708518
Score = 113 bits (124), Expect = 3e-19
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| ||||||||| | ||||| || |||||||| |||||||||||| | |||||||||
Sbjct 2985384 GGTAAGGAAGGTCGTCTCAGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 2985443
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || |||||| |||| | || || | ||| | || || ||||| |||| | |||
Sbjct 2985444 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCACGAGGTCGGTGTGCCTCGAAGTATC 2985503
Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439
|| | || ||||||| | ||| | ||||||
Sbjct 2985504 GCCAGAACCCTTACTTATCCCGAGACTGTAAC 2985535
Score = 89.7 bits (98), Expect = 4e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|||||||||||||| | ||||||||||| |||||| | ||| |||| || | || |||
Sbjct 2986827 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 2986886
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239
||||| |||||||| ||||| || | | |||||| ||||||||
Sbjct 2986887 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 2986933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740630203616904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |