Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq2 118 1e-21 seq1 107 2e-18 >seq3 Length=7630574 Score = 134 bits (148), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 6114390 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 6114448 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || ||||||||||| || ||||| || |||||||| ||| Sbjct 6114449 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 6114508 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | |||||| || | ||||| || || || Sbjct 6114509 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 6114568 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||||||||| Sbjct 6114569 CGTGAGGGTCTTGACGAAAATCTGCATG 6114596 >seq2 Length=8818970 Score = 118 bits (130), Expect = 1e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| ||||| || ||||| || | || ||| |||||||||| Sbjct 2562772 ATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT--ACGGCCGTCCTCGAGC 2562829 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| | ||||||||||| ||||||||||| ||||| || |||| Sbjct 2562830 TGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATC 2562889 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| | ||| || || | ||||| ||| ||||| Sbjct 2562890 TTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCT 2562949 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 2562950 GTGAGGGTCTTGACGAAGATTTGCAT 2562975 Score = 107 bits (118), Expect = 2e-18 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| || || ||||| || ||||| ||| | || || || ||||||||||||||| Sbjct 2562496 GGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCG--TCCTCGAGCTGCTTG 2562553 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| | ||||||||||| |||||||| || |||||||| ||||| | Sbjct 2562554 CCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTGGAC 2562613 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||||| | ||| || || | ||||| ||| |||||||||| Sbjct 2562614 TTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTCTTGCCGGTCAAG 2562673 Query 133641 GTTTTTACGA 133650 || || |||| Sbjct 2562674 GTCTTGACGA 2562683 Score = 102 bits (112), Expect = 8e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || | || | | | ||||||||||||||||| Sbjct 2563007 GTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCA-TCCTCGAGCTGCTTGCC 2563065 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || || ||||| || |||||||| ||||| ||| Sbjct 2563066 GGCGAAAATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTT 2563125 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || |||| ||| | || |||||||||| || Sbjct 2563126 GACATTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 2563185 Query 133643 TTTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 2563186 CTTGACGAAGATCTGCATGG 2563205 >seq1 Length=11717239 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || |||||||| |||||| Sbjct 6373593 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 6373534 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | | ||| || |||| ||||| | Sbjct 6373533 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 6373474 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 || ||||| ||||| || || |||||| ||| ||||| Sbjct 6373473 GTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 6373438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420775828960