Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 183 4e-40 >seq3 Length=7630574 Score = 183 bits (202), Expect = 4e-40 Identities = 370/535 (69%), Gaps = 37/535 (7%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||||||||| ||||| || |||||| |||| | Sbjct 2145841 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATC 2145783 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-------GTGTCGCTGAGCGACGACGAGCGCCA 1455883 || | || |||| ||||| || | || | ||||||| | Sbjct 2145782 TCTCCAAGGATCTCCACG----ACTGGAACAACCGTTTGACTTCG----GACGAGCAATA 2145731 Query 1455884 TTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACC 1455943 |||||| ||| | || || ||| ||||| ||| ||| |||||||| ||||||| Sbjct 2145730 CTTCATCTCCCACATTCTTGC-TTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACC 2145672 Query 1455944 TGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCC 1456003 | | | || || | |||||||| | || ||||| || | || || || |||| Sbjct 2145671 TTGTTGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCC 2145612 Query 1456004 AGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 ||||| || || ||||||||||| ||||| ||||| ||||| ||||| |||||| ||| Sbjct 2145611 AGATCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCA 2145552 Query 1456064 AGGACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGG 1456122 ||||||| | | || | || ||||||| |||| | ||||| | || | | | Sbjct 2145551 AGGACCCTGCCCAG-CGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGA 2145493 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| || ||||| || |||||| ||||| | ||| | |||||| Sbjct 2145492 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAA----CTCTTC-CTTTGCTC 2145438 Query 1456180 AGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGC 1456236 |||| || || | ||||| | ||| ||||| ||||| ||| ||| || || || | Sbjct 2145437 AGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCT--TC 2145380 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 |||||| |||||||||||||| ||||||||||| |||| | ||||| |||||| Sbjct 2145379 CATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTC-TGAGCTTTTCCAACGA 2145326 Score = 114 bits (126), Expect = 2e-19 Identities = 179/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || ||| ||| ||||| || ||| | ||||| ||| |||| | || || || Sbjct 2145231 ATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTCCTCACCGAGGCTCTCCCTTGTGCT 2145172 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | |||||| |||||||| ||||| |||||||| |||| Sbjct 2145171 CTGCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATCGAATTC-GTCGCCGATCGCC 2145114 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| ||| |||||| || ||||| ||| | | ||||||| ||| | ||| Sbjct 2145113 TCCTCGTGGCTCTCGGCAACG-AGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATG 2145055 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| ||||| || || ||| Sbjct 2145054 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAG 2144995 Query 1456762 AAGGCCGGCGT 1456772 |||||||| || Sbjct 2144994 AAGGCCGGTGT 2144984 Score = 105 bits (116), Expect = 1e-16 Identities = 201/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 |||||| |||| ||| ||||| ||| |||| ||||| | || || ||||| || || Sbjct 1350777 CATGTCA-AGCAAGTTCTTCAC-TCATGCGAGCCCCACTTTGTTCAACGCCGGTACCCCA 1350834 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | || ||| || || ||||| || | || ||||||| || || || || ||| Sbjct 1350835 CAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGGACAGCATTGATGGTATC 1350894 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 || || || |||||| || || | || |||||| ||| || || || || || | Sbjct 1350895 TACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTAAAC 1350954 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || ||| | ||| | ||| | || || ||||| || |||||||| Sbjct 1350955 GCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAATGGTACTTCCAACGGT 1351014 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| |||||||| || || || ||| |||| || || |||||||||||| Sbjct 1351015 ATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAG 1351065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810814192648