Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq2 82.4 6e-11 >seq3 Length=7630574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||||||| | |||| | || ||| Sbjct 6114387 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6114446 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | || || ||||| || ||||| || | |||||| || || | Sbjct 6114447 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 6114506 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | || || || || || || | || Sbjct 6114507 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6114566 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || || || || ||||| Sbjct 6114567 CCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 >seq2 Length=8818970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | | | || |||| |||||||| || ||| Sbjct 2562779 GTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 2562838 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| | ||||| || || || || | ||||| ||||| ||||||| || Sbjct 2562839 GCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGACTTG 2562898 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | || || || || || || | ||||| || || || Sbjct 2562899 ACATTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTC 2562958 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 2562959 TTGACGAAGATTTGCATA 2562976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934379284448