Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 1e-14 >seq3 Length=7630574 Score = 96.9 bits (106), Expect = 1e-14 Identities = 205/300 (68%), Gaps = 12/300 (4%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| ||| | || ||| | ||||||||||||||| ||||| |||||||| || || || Sbjct 1351011 CGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAGGGTGG 1351070 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 ||| || || || || ||| |||||||||| ||||| |||||||||||| | Sbjct 1351071 TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCACGCCGACGTCTTCGA 1351130 Query 255091 GTTTTTACTGCTGTCCGACAAGAC--CGGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148 ||| | || | ||||| | || ||| | |||||| | ||| || ||| | | | Sbjct 1351131 GTTCCT--TGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGCTCGTGACCTGTTC 1351188 Query 255149 ACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA--GAC--CTG 255204 ||| | ||| | ||||| || || || ||||| ||||| || | | || Sbjct 1351189 CTGGCTCTTTGGATCCCTGATCTTTTCAT--GAAGCGTG--TCGAGAGGAACGGCGAATG 1351244 Query 255205 GAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 || |||||||| |||||| || || ||||| | |||| | |||||||| ||||| Sbjct 1351245 GACTCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATTTGA 1351304 Score = 96.9 bits (106), Expect = 1e-14 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || || |||||||||| || || || | || || ||||| |||| || ||| Sbjct 2145437 AGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTT-GCTTCC 2145379 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || |||||||| || |||| ||||||| |||| ||||| || || Sbjct 2145378 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATT 2145319 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||| || |||||| | || ||||| |||||||| ||| || Sbjct 2145318 TCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGTCTCCTCCAC 2145274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335918597780