Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 203 4e-47 >seq3 Length=7630574 Score = 203 bits (224), Expect = 4e-47 Identities = 1008/1585 (64%), Gaps = 45/1585 (3%) Strand=Plus/Minus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 ||| ||||| || || || ||| |||||| || | ||||| | | ||| ||||| Sbjct 1352262 AATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTG 1352203 Query 110584 GATGGAACCCCCCGCCTTCACCA----TGAGATCCTTCATATCCTTGGACCAGAGACCAA 110639 ||| ||||| | ||| || || | | ||||||| | | |||||| ||||| | Sbjct 1352202 GATAGAACC----GTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCA 1352147 Query 110640 TCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTC 110699 | | || || |||| || |||||||| ||||| || || ||| || Sbjct 1352146 TGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTC 1352087 Query 110700 TTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTG 110759 | |||||||||| | ||||| || |||||||| || || || || | || || | Sbjct 1352086 GGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCG 1352027 Query 110760 CGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGA 110819 ||| ||| || ||||| || || | | |||||||| || | ||| | ||||| Sbjct 1352026 AGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGA 1351967 Query 110820 TGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTC 110877 || ||| ||||| || | | | || || || || |||| ||||||| Sbjct 1351966 CATCCTCTCGGAGGGGTTCCCAATCCCAAAGATCAGAG-GGCTTGACATTCC-ACATGTC 1351909 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 |||||| || | || | || || || ||||||| ||||| |||| ||||| | Sbjct 1351908 AAACTGGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTC 1351849 Query 110938 TTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 | || | || ||||| || |||| || || || ||||| || ||||| | Sbjct 1351848 CTTGGCGAGTTGCACAGA-CGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCT 1351790 Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056 |||| ||| || || || ||||| | |||| || || |||| | Sbjct 1351789 TGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAG 1351730 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 |||||||||||||||| | |||||| |||| ||| ||||| || || || || | Sbjct 1351729 CGAGACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTT 1351670 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 || || || || ||| |||| ||| | ||| | ||||| | |||| Sbjct 1351669 GGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGA 1351610 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAA 111233 || || || || | | || | || || ||||||| ||| | || | Sbjct 1351609 CCTCGTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATGAAAGAGGGCA 1351553 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 | | | || || | ||||||||||| |||||| | ||| || | || | Sbjct 1351552 GAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCT 1351493 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || || || || | ||||||||||| ||||| |||| Sbjct 1351492 CAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGC 1351433 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | |||||||||||||||| | || | || ||||| ||||| | | ||||| || | Sbjct 1351432 AGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGT 1351373 Query 111414 TCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTG 111470 ||||| | || | | | || || | | || | ||| | ||||| |||||||||| Sbjct 1351372 ACCAAAGCTTCTGAGCCTTGATAGACTTGC---GACCCTTACCCTCTCTCTCGTACTTTT 1351316 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGA 111529 ||| || || ||||| || ||||| ||| | ||||| || || || || || Sbjct 1351315 CGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGG 1351257 Query 111530 CAGAAAAGAGACCATTGACC--ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 || | |||| ||||| || ||| ||| || |||||||||||||| || || |||| Sbjct 1351256 CACATGAGAGTCCATTCGCCGTTCCT--CTCGACACGCTTCATGAAAAGATCAGGGATCC 1351199 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 | || | || || || | | || |||| || | || ||||| ||| | | Sbjct 1351198 AAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGAT 1351139 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATC 111701 |||||||||| | || || ||||||||||||||||| |||| |||| || || Sbjct 1351138 CAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTC 1351079 Query 111702 CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 ||| | ||| | || | || || || || ||| ||| || || || ||||| | Sbjct 1351078 GCTTGTTA---CCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGG 1351022 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 ||| |||||| | || |||||| || || || ||| | |||| | | Sbjct 1351021 GAACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTC 1350962 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 ||| || | |||||||| |||||| ||| || || ||||| | | || | Sbjct 1350961 GGTGGGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 1350902 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | |||||||| | || ||||||||| | | | ||||||||| || | || Sbjct 1350901 TATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCT 1350842 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-- 111999 | || ||| ||||| || ||||| | || || | || ||| ||| | | |||| Sbjct 1350841 GAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AGAACTTGCT 1350784 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| || |||||||||||||||| ||||| || || || ||| || | || Sbjct 1350783 TGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATCCCAACAGC 1350724 Query 112060 GACCCGCATGAACATGTACTGTGGG 112084 ||| ||||||| ||| | ||| ||| Sbjct 1350723 GACTCGCATGATCATATGCTGCGGG 1350699 Score = 102 bits (112), Expect = 1e-16 Identities = 331/505 (66%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 2144999 TAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 2145058 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || | | || | | | | || | | | || |||| Sbjct 2145059 AAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCAC------GAGG 2145112 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || ||||| | || | || ||||||| ||| | |||||||| |||| || Sbjct 2145113 AGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGA 2145172 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| ||||| || || || |||| | | |||||| ||| || || | | ||| Sbjct 2145173 GCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 2145232 Query 122605 GCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| ||| || | || | || ||| || |||| Sbjct 2145233 TCCTGGATCATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGA--CA-GGCA 2145289 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| ||||||||||| || ||||| || || || || |||| ||||| ||| Sbjct 2145290 AAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGC 2145349 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACC 122780 ||||| || |||||||| | ||| | || | ||| || | ||| |||||||||||| Sbjct 2145350 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACC 2145408 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACC 122839 ||| || ||||| |||| ||| || | || ||||| ||| ||| | | | || Sbjct 2145409 CTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGA-AGAGTTCTTGTCCTGGATCC 2145467 Query 122840 ATTTCATTGCCCATTTCGCCTTCTT 122864 || || ||||| | ||||||||| Sbjct 2145468 ATCGGATGGCCCAATCCGCCTTCTT 2145492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031968598400