Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq3 203 4e-47
>seq3
Length=7630574
Score = 203 bits (224), Expect = 4e-47
Identities = 1008/1585 (64%), Gaps = 45/1585 (3%)
Strand=Plus/Minus
Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583
||| ||||| || || || ||| |||||| || | ||||| | | ||| |||||
Sbjct 1352262 AATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTG 1352203
Query 110584 GATGGAACCCCCCGCCTTCACCA----TGAGATCCTTCATATCCTTGGACCAGAGACCAA 110639
||| ||||| | ||| || || | | ||||||| | | |||||| ||||| |
Sbjct 1352202 GATAGAACC----GTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCA 1352147
Query 110640 TCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTC 110699
| | || || |||| || |||||||| ||||| || || ||| ||
Sbjct 1352146 TGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTC 1352087
Query 110700 TTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTG 110759
| |||||||||| | ||||| || |||||||| || || || || | || || |
Sbjct 1352086 GGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCG 1352027
Query 110760 CGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGA 110819
||| ||| || ||||| || || | | |||||||| || | ||| | |||||
Sbjct 1352026 AGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGA 1351967
Query 110820 TGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTC 110877
|| ||| ||||| || | | | || || || || |||| |||||||
Sbjct 1351966 CATCCTCTCGGAGGGGTTCCCAATCCCAAAGATCAGAG-GGCTTGACATTCC-ACATGTC 1351909
Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937
|||||| || | || | || || || ||||||| ||||| |||| ||||| |
Sbjct 1351908 AAACTGGAGAATACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTC 1351849
Query 110938 TTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996
| || | || ||||| || |||| || || || ||||| || ||||| |
Sbjct 1351848 CTTGGCGAGTTGCACAGA-CGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCT 1351790
Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056
|||| ||| || || || ||||| | |||| || || |||| |
Sbjct 1351789 TGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAG 1351730
Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116
|||||||||||||||| | |||||| |||| ||| ||||| || || || || |
Sbjct 1351729 CGAGACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTT 1351670
Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176
|| || || || ||| |||| ||| | ||| | ||||| | ||||
Sbjct 1351669 GGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGA 1351610
Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAA 111233
|| || || || | | || | || || ||||||| ||| | || |
Sbjct 1351609 CCTCGTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATGAAAGAGGGCA 1351553
Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293
| | | || || | ||||||||||| |||||| | ||| || | || |
Sbjct 1351552 GAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCT 1351493
Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353
| || || | |||||| || || || || | ||||||||||| ||||| ||||
Sbjct 1351492 CAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGC 1351433
Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413
| |||||||||||||||| | || | || ||||| ||||| | | ||||| || |
Sbjct 1351432 AGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGT 1351373
Query 111414 TCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTG 111470
||||| | || | | | || || | | || | ||| | ||||| ||||||||||
Sbjct 1351372 ACCAAAGCTTCTGAGCCTTGATAGACTTGC---GACCCTTACCCTCTCTCTCGTACTTTT 1351316
Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGA 111529
||| || || ||||| || ||||| ||| | ||||| || || || || ||
Sbjct 1351315 CGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGG 1351257
Query 111530 CAGAAAAGAGACCATTGACC--ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587
|| | |||| ||||| || ||| ||| || |||||||||||||| || || ||||
Sbjct 1351256 CACATGAGAGTCCATTCGCCGTTCCT--CTCGACACGCTTCATGAAAAGATCAGGGATCC 1351199
Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647
| || | || || || | | || |||| || | || ||||| ||| | |
Sbjct 1351198 AAAGAGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGAT 1351139
Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATC 111701
|||||||||| | || || ||||||||||||||||| |||| |||| || ||
Sbjct 1351138 CAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTC 1351079
Query 111702 CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761
||| | ||| | || | || || || || ||| ||| || || || ||||| |
Sbjct 1351078 GCTTGTTA---CCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGG 1351022
Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821
||| |||||| | || |||||| || || || ||| | |||| | |
Sbjct 1351021 GAACAATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTC 1350962
Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881
||| || | |||||||| |||||| ||| || || ||||| | | || |
Sbjct 1350961 GGTGGGCGTTTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 1350902
Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941
| | |||||||| | || ||||||||| | | | ||||||||| || | ||
Sbjct 1350901 TATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCT 1350842
Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-- 111999
| || ||| ||||| || ||||| | || || | || ||| ||| | | ||||
Sbjct 1350841 GAGGCTGTGGGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGA--AGAACTTGCT 1350784
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||| || |||||||||||||||| ||||| || || || ||| || | ||
Sbjct 1350783 TGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATCCCAACAGC 1350724
Query 112060 GACCCGCATGAACATGTACTGTGGG 112084
||| ||||||| ||| | ||| |||
Sbjct 1350723 GACTCGCATGATCATATGCTGCGGG 1350699
Score = 102 bits (112), Expect = 1e-16
Identities = 331/505 (66%), Gaps = 22/505 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| | || |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 2144999 TAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 2145058
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484
||||| || || || | | || | | | | || | | | || ||||
Sbjct 2145059 AAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCCAC------GAGG 2145112
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|| ||||| | || | || ||||||| ||| | |||||||| |||| ||
Sbjct 2145113 AGGCGATCGGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGA 2145172
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
||| ||||| || || || |||| | | |||||| ||| || || | | |||
Sbjct 2145173 GCACAAGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 2145232
Query 122605 GCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661
| ||||| | | | ||| ||| || | || | || ||| || ||||
Sbjct 2145233 TCCTGGATCATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGA--CA-GGCA 2145289
Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721
|| || ||| ||||||||||| || ||||| || || || || |||| ||||| |||
Sbjct 2145290 AAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGC 2145349
Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACC 122780
||||| || |||||||| | ||| | || | ||| || | ||| ||||||||||||
Sbjct 2145350 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACC 2145408
Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACC 122839
||| || ||||| |||| ||| || | || ||||| ||| ||| | | | ||
Sbjct 2145409 CTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGA-AGAGTTCTTGTCCTGGATCC 2145467
Query 122840 ATTTCATTGCCCATTTCGCCTTCTT 122864
|| || ||||| | |||||||||
Sbjct 2145468 ATCGGATGGCCCAATCCGCCTTCTT 2145492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031968598400
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