Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 192 7e-44 seq4 89.7 6e-13 >seq3 Length=7630574 Score = 192 bits (212), Expect = 7e-44 Identities = 962/1511 (64%), Gaps = 61/1511 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || || | || || || || || ||||| ||| Sbjct 1350699 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGT 1350758 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||| |||| | | ||| ||| || | || || | Sbjct 1350759 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCGAGCCCCACTTTG 1350816 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| ||| || || | || ||||||||| | | | |||||| Sbjct 1350817 TTCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAG 1350876 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 1350877 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 1350936 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| | || ||| | | |||| | ||| || || || Sbjct 1350937 GGTGGTATTGGCTTAAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 1350996 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| || | |||||| |||| ||||| || || || ||| ||| || || || Sbjct 1350997 AATGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 1351056 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| | ||| || || |||| |||| |||||||||||| Sbjct 1351057 GTCGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGG 1351113 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || ||||| || | ||||||| ||| Sbjct 1351114 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGC 1351173 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || ||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 1351174 GCT--CGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 1351231 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809 || ||| | ||| ||||| | || || || || || |||||||| | || | Sbjct 1351232 GGAACGGCGAATGGACTCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTAC 1351290 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || ||||| || || ||| |||||||||| ||| ||| || | | || | Sbjct 1351291 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 1351348 Query 104870 GTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || ||| | || | | ||| | || ||||| || | || || |||||||| | Sbjct 1351349 CTATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAAC 1351407 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| || ||| || | ||||| || |||||||| | ||| Sbjct 1351408 CCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAACCTTGGTACC 1351467 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||| || || || || ||| | |||| | | |||||| ||| Sbjct 1351468 ATCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCT 1351527 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACA 105097 || || ||||| || || | |||| || ||| |||| ||| | | Sbjct 1351528 GTTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTCATCAACTATGAAGATGC--TTGCT 1351585 Query 105098 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | ||| || | | || || ||||| || || || ||| | || | ||| Sbjct 1351586 ACGAC--TTCA-----AGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAAC 1351638 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | | || || || ||||| || | |||||||| || ||| | ||| Sbjct 1351639 AAGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCAC 1351698 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG---TCGCCAC 105274 || || |||||||| |||||||| |||||||| |||| | ||| ||| || || Sbjct 1351699 CGACCCATTGGTCTTGGTGTTCAAGGTCTCGCTGATG----CCTTCCTTGCCCTCCGCAT 1351754 Query 105275 G-CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 | | ||||| || ||| || || | || || || || |||||||| || || Sbjct 1351755 GCCCTTTGAGTCTCCCGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCA 1351814 Query 105334 CGCCGCTCTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 || || ||| | | || || | | | || ||| || ||||| || ||||| Sbjct 1351815 TGCTGCCCTTACCACGTCTGTGCA-ACTCGCCA-AGGAGGAAGGTCCCTACTCCACCTTC 1351872 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451 ||||||| || || || | || | || || ||||| |||||| | | || || Sbjct 1351873 AAGGGTTCCCCTGCCTCTGAGGGTATTCTCCAGTTTGACATGTGGAATGTCAAGCCCTCT 1351932 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 || | || |||||| | ||| || ||||| | ||| | || |||||| Sbjct 1351933 GATCTTTGGGATTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGT 1351992 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || ||| | ||||| ||||| || ||| ||| | || || | || || || || ||| Sbjct 1351993 CTGCTCGTTGCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGC 1352052 Query 105572 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 105631 ||||| || ||||| | |||||||| | | || ||| || || ||||| | || Sbjct 1352053 TTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTT 1352112 Query 105632 GTCAA---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 105688 ||||| | || |||| |||| || || || ||||| |||||| | | |||| Sbjct 1352113 GTCAACCCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTATG 1352169 Query 105689 AAGGATCTCAT 105699 ||| | | ||| Sbjct 1352170 AAGAACCGCAT 1352180 Score = 134 bits (148), Expect = 2e-26 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 94794 |||| || || | |||||| ||||||||||| || ||| | | |||| | | | Sbjct 2145506 TTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAACTC-T 2145448 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||||||| |||| || | || ||||| |||||||||||||||||| ||| || Sbjct 2145447 TCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 2145388 Query 94855 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || ||| | || | |||||||||||||| || |||||||| ||||| |||| ||||| Sbjct 2145387 TT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAA 2145329 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| || |||||||| ||||| || ||| || ||||| Sbjct 2145328 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACTGACTTTGC 2145287 >seq4 Length=8011673 Score = 89.7 bits (98), Expect = 6e-13 Identities = 180/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||| || || |||| ||| || || || | ||| | | | || || Sbjct 1434453 GGCATCAATCTCGTCGATAAAGATGATACAAGGAGCGTTCTTACGACCCTCGGCGAATAG 1434512 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9821 ||| ||||| ||| | || ||||||||||||||||| || || | | | || || Sbjct 1434513 ATCTCGTACTCGCGAAGGTCCAACACCAACAAACATCTCGACGAATTCGGAGCCGCTCAC 1434572 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1434573 ACT-GAAGAAGGGCACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1434631 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1434632 TACCAGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1434691 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 1434692 ---TCTCAGGCTGCTTCAAGAA 1434710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260770836960