Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 1e-26
seq1 129 2e-24
seq3 105 2e-17
>seq2
Length=8818970
Score = 136 bits (150), Expect = 1e-26
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || ||||| ||||| ||||| || || ||||| |
Sbjct 2562969 TTTGCATACCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGT 2563028
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || || || || || | || |||||||
Sbjct 2563029 AGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 2563088
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || ||||| || || | ||||||||
Sbjct 2563089 CCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATG 2563148
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || |||| ||||| ||||| | || || || || ||||||||
Sbjct 2563149 ACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203
Score = 118 bits (130), Expect = 3e-21
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || |||||||| || ||||| || ||||| || |
Sbjct 2562741 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGT 2562800
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || || || || || || || || | || ||||| |
Sbjct 2562801 AGTCTGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGT 2562860
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || |||||||| || || | || ||||| || || | || ||||
Sbjct 2562861 CAGGAGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATG 2562920
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | ||||| || || || || || || || || |||||
Sbjct 2562921 ACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975
>seq1
Length=11717239
Score = 129 bits (142), Expect = 2e-24
Identities = 434/671 (65%), Gaps = 15/671 (2%)
Strand=Plus/Minus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 2709649 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 2709590
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || || | || || || | || ||
Sbjct 2709589 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 2709530
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || || || |||||| | || ||| | ||||| | |||| || ||
Sbjct 2709529 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 2709476
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
| ||| | || || || || || || | | | | ||| | || || || | ||
Sbjct 2709475 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 2709419
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||||||| | || ||||| | || || ||||| || || || | ||| |
Sbjct 2709418 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 2709359
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || ||| || | ||||| | || | ||||| || || | | || |||
Sbjct 2709358 CTCACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGTGAGACCGTCAACAACGCCGTT 2709299
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| || || || ||||| || || || | |||||| || || || ||||| || |
Sbjct 2709298 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 2709239
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| || || | || ||||| |||| || || || || || ||||| || || || ||
Sbjct 2709238 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATCGCCTAC 2709179
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| || || || | | || || || | || || || ||| | |||||||||
Sbjct 2709178 GGTCTCGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 2709119
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || || || |||| ||||| || || || || || | |||||
Sbjct 2709118 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 2709059
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| |||||||| ||||| || |||||| || || |||||
Sbjct 2709058 GGTGACACTCACTTGGGTGGTGAAGATTTCGATAACCGCCTCGTTAACCACTTCGTTAAC 2708999
Query 349916 GAATTTAAGCG 349926
|| || || ||
Sbjct 2708998 GAGTTCAAACG 2708988
Score = 118 bits (130), Expect = 3e-21
Identities = 180/255 (71%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281
|||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | ||
Sbjct 2986913 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 2986854
Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341
|||| |||| || |||||||| ||||| |||| ||||| |||| | | || ||||
Sbjct 2986853 ACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 2986794
Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401
| || || | || | || |||| ||||| || || ||||||| | |||||||
Sbjct 2986793 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 2986734
Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458
|| || ||| | ||||| || ||||| ||||| | || |||| |||| ||||
Sbjct 2986733 CTTGAAACCAAAGGGAATACGCTTTCCTTCAACGATTTGCTGACCGACAAGCGCAG---T 2986677
Query 378459 CATTTGAGCAATATT 378473
|||||| | ||| ||
Sbjct 2986676 CATTTGTGAAATGTT 2986662
Score = 87.8 bits (96), Expect = 5e-12
Identities = 109/149 (73%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || |||||||| | || || ||| || || | |||||||| ||
Sbjct 2987707 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 2987651
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || || || | ||||| | ||||||||||| ||||| || || | |||
Sbjct 2987650 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 2987591
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594
||||||||||| || || ||||| | |||
Sbjct 2987590 CCAACCATTTCACCGGGGTTGACGAAAGC 2987562
>seq3
Length=7630574
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 6114365 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 6114424
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 6114425 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 6114484
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || ||||| | || || | ||
Sbjct 6114485 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 6114544
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 6114545 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254322343212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |