Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 136 1e-26 seq1 129 2e-24 seq3 105 2e-17 >seq2 Length=8818970 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||| ||||| || || ||||| | Sbjct 2562969 TTTGCATACCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGT 2563028 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || || || || | || ||||||| Sbjct 2563029 AGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 2563088 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || ||||| || || | |||||||| Sbjct 2563089 CCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATG 2563148 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || |||| ||||| ||||| | || || || || |||||||| Sbjct 2563149 ACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || ||||| || ||||| || | Sbjct 2562741 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGT 2562800 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || || || || || || | || ||||| | Sbjct 2562801 AGTCTGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGT 2562860 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || |||||||| || || | || ||||| || || | || |||| Sbjct 2562861 CAGGAGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATG 2562920 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| || || || || || || || || ||||| Sbjct 2562921 ACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 >seq1 Length=11717239 Score = 129 bits (142), Expect = 2e-24 Identities = 434/671 (65%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 2709649 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 2709590 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 2709589 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 2709530 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 2709529 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 2709476 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || | || Sbjct 2709475 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 2709419 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 2709418 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 2709359 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | ||||| | || | ||||| || || | | || ||| Sbjct 2709358 CTCACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGTGAGACCGTCAACAACGCCGTT 2709299 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || ||||| || | Sbjct 2709298 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 2709239 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || || || || Sbjct 2709238 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATCGCCTAC 2709179 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | || || || | || || || ||| | ||||||||| Sbjct 2709178 GGTCTCGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 2709119 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 2709118 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 2709059 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| |||||||| ||||| || |||||| || || ||||| Sbjct 2709058 GGTGACACTCACTTGGGTGGTGAAGATTTCGATAACCGCCTCGTTAACCACTTCGTTAAC 2708999 Query 349916 GAATTTAAGCG 349926 || || || || Sbjct 2708998 GAGTTCAAACG 2708988 Score = 118 bits (130), Expect = 3e-21 Identities = 180/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281 |||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | || Sbjct 2986913 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 2986854 Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341 |||| |||| || |||||||| ||||| |||| ||||| |||| | | || |||| Sbjct 2986853 ACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 2986794 Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401 | || || | || | || |||| ||||| || || ||||||| | ||||||| Sbjct 2986793 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 2986734 Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458 || || ||| | ||||| || ||||| ||||| | || |||| |||| |||| Sbjct 2986733 CTTGAAACCAAAGGGAATACGCTTTCCTTCAACGATTTGCTGACCGACAAGCGCAG---T 2986677 Query 378459 CATTTGAGCAATATT 378473 |||||| | ||| || Sbjct 2986676 CATTTGTGAAATGTT 2986662 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || |||||||| | || || ||| || || | |||||||| || Sbjct 2987707 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 2987651 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | ||||||||||| ||||| || || | ||| Sbjct 2987650 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 2987591 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 ||||||||||| || || ||||| | ||| Sbjct 2987590 CCAACCATTTCACCGGGGTTGACGAAAGC 2987562 >seq3 Length=7630574 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 6114365 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 6114424 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 6114425 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 6114484 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || ||||| | || || | || Sbjct 6114485 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 6114544 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 6114545 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254322343212