Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 385 5e-102 >seq3 Length=7630574 Score = 385 bits (426), Expect = 5e-102 Identities = 1137/1731 (66%), Gaps = 45/1731 (3%) Strand=Plus/Minus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||| || | ||||||||||| ||||||||||| |||||| || | |||||| | Sbjct 1352428 GTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGC 1352369 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | | | |||| ||| | |||| || |||| |||||||| ||||| ||||| || | Sbjct 1352368 TGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGATCAA 1352309 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | ||||| ||||| || ||||| | | ||| || | ||||||||| | | Sbjct 1352308 TGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAG 1352249 Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGGC 78425 || ||| | ||||| | ||| | |||||| | | ||| | | | |||| Sbjct 1352248 TCTTGTACAGAGCCTTGATCTCGGCAGGGATGTT--GGGGATGTTCTGGATAGAACCGT- 1352192 Query 78426 TCGCA-CAAT--TTCA-TTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCC 78481 | || |||| | | ||||| || | | ||| || || | ||||||| Sbjct 1352191 TATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAGATCCT 1352132 Query 78482 GGA----CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 || ||||| |||| | | ||||||||| || ||| ||||| ||||| Sbjct 1352131 TGAGAAGCCAGG----GGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAG 1352076 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGC 78596 ||||||| ||||| ||||| ||||| ||||||||| || | ||||| | ||| ||| Sbjct 1352075 ATGTTGGAGGTGTAAGGCTC-AAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGC 1352017 Query 78597 GGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT 78656 ||| ||||| || || || || ||| || || | ||| || ||||||| || | Sbjct 1352016 GGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCG 1351957 Query 78657 TAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGAT 78710 ||| | ||||||| ||| | | || ||||||||| || || || Sbjct 1351956 GAGGGGTTCCCAATCCCAAAGATCAGAGGGCTTGACATTCCACATGTCAAACTGGAGAAT 1351897 Query 78711 ACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTC 78770 |||||| || || || || |||||||| || ||| | || |||||||||||||||| Sbjct 1351896 ACCCTCAGAGGCAGGGGAACCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTT- 1351838 Query 78771 GCAT-GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC 78829 ||| ||| | ||||| || ||||| | | ||||||||| |||||| ||||| | Sbjct 1351837 GCACAGACGTGGTAAGGGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCAC 1351778 Query 78830 GCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGA 78889 | |||| || || || | | || ||| | |||| |||| || || || || | Sbjct 1351777 GAGCCTCGGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCGAGACCTTGAA 1351718 Query 78890 CGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAA 78949 | || | | | || |||||||| ||||||||||| || || ||| | | | ||||| Sbjct 1351717 CACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGT 1351658 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATT 79009 ||| ||||||| ||||| || || || || |||| ||||||| || | Sbjct 1351657 GGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCT 1351598 Query 79010 TGGCGAAATCAAA---ATGAT-TTCCT--TTGATGAAAGTCGGTAGGCACAGCGATGCCA 79063 | ||| || | | || ||| | |||||||||| || || ||| || || | Sbjct 1351597 TCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGACAAGGAGGCAA 1351538 Query 79064 GGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123 ||||||| || || ||| || ||| | || ||||| || ||||||| || | Sbjct 1351537 GGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCACAGGTTGG 1351478 Query 79124 ACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 | ||| |||||| || | |||||| ||||||||||| || ||| |||||||| Sbjct 1351477 AG--CTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCCTTGTA 1351420 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCG 79241 | |||| | || | || ||||| ||| || |||| | ||| ||| | | | | Sbjct 1351419 GAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTG 1351360 Query 79242 GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAA 79301 ||| || | ||| | ||||| | ||||| | ||||| | | || Sbjct 1351359 AGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAA 1351300 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 | || || ||| || | || || ||||| |||| |||||||| || ||| || Sbjct 1351299 TTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGTCCATTC 1351240 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421 ||| | |||| || || |||||| || || |||||||| || ||| ||| ||||| Sbjct 1351239 GCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTC 1351180 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 || || | |||||| | || |||||| || || || || || || | || ||| Sbjct 1351179 ACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACGTC 1351120 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 ||||||||| ||||| || ||||||||||| | ||| |||||| || ||||||| Sbjct 1351119 GGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTC 1351060 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601 |||||| || || ||||||||||| || || |||||||| || || |||| || || Sbjct 1351059 GACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGAAGTACC 1351000 Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCG--AGCAGTGGATTCCGATG 79659 || || ||| ||| | || | || || | |||| | || | || || Sbjct 1350999 ATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGA--TTCGGTGGGCGTTTAAGCCAATA 1350942 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || || | | |||||| || || || |||||| || |||||||| || || || Sbjct 1350941 CCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATCAATG 1350882 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779 ||| ||||||||| | || |||||||| || | ||| || | ||||||||| Sbjct 1350881 CTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGGGTACCGGCG 1350822 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT--TTGGCTCATCAGATCGTACGTCT 79837 ||||| | || || |||| || ||||||||||| ||| ||| || | ||| |||| Sbjct 1350821 TTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTG--ACATGAGGTTGTATGTCT 1350764 Query 79838 CCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 || ||| ||| | ||||| || ||| || || ||||| ||||||| Sbjct 1350763 CCAAGACACGCTCAATATCGTCACCCCAGATCCCAACAGCGACTCGCATGA 1350713 Score = 361 bits (400), Expect = 6e-95 Identities = 919/1378 (67%), Gaps = 34/1378 (2%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||||||||| || || ||| || ||||| | ||| ||| ||||||||| Sbjct 1350713 TCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGTCTTGGAGACATACA 1350772 Query 19176 ACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234 |||| ||| | || ||||||||||| || |||| || || | |||||||||||||| Sbjct 1350773 ACCTCATGT-CAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTGTTCAACGCCGGTACC 1350831 Query 19235 AACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 | || ||| | || || ||||| || | ||||||||| ||||||||||| || Sbjct 1350832 CCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGGACAGCATTGATGGT 1350891 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 |||||||| || |||||| || || || |||||| | | || ||||| || | Sbjct 1350892 ATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTA 1350951 Query 19355 CACTGCT--CGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCG 19412 || | ||||| ||| | | ||| | ||| || || || || || Sbjct 1350952 AACGCCCACCGAAT--CCGTGCCACTGGCTCTTACATCGCCGGTACCAATGGTACTTCCA 1351009 Query 19413 ACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGG 19472 ||||||| || || ||||| || || ||||||||||| || | |||||| ||||||| | Sbjct 1351010 ACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAGGGTG 1351069 Query 19473 GCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGG 19532 | ||| || || | |||||||||||||| |||||||||||||| |||||| | | Sbjct 1351070 GTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCACGCCGACGTCTTCG 1351129 Query 19533 ATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCA 19592 | ||||| || || || |||||| || | |||||| | ||| ||| ||||| ||| Sbjct 1351130 AGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGCTCGTGACCTGTTCC 1351189 Query 19593 CGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACC 19652 ||| | ||||| || || || |||||| || || |||| | ||| |||||| | Sbjct 1351190 TGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGGAACGGCGAATGGACTC 1351249 Query 19653 TGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGT 19712 | |||||||| ||||||||||||| || | ||| |||||| || | || | | Sbjct 1351250 TCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATTTGAGGCTC 1351309 Query 19713 TGTACCGGACTTACG-TAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTC 19771 ||||| | |||| || || || || ||| || ||| | | | | Sbjct 1351310 TGTACGAAAAGTACGAGAGAGAGGGTAAGGGTC-GCAAGTCTATCAAGGCTCAGAAGCTT 1351368 Query 19772 TGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGA- 19830 ||| || | | || | |||| ||||| || | || | |||| ||||||||| Sbjct 1351369 TGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACCCTTTCATGCTCTACAAGGAT 1351428 Query 19831 CGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC--AAGTCGTCCAACCTG 19888 | | || | || |||| || || |||||| | || | ||| ||| ||||||||| Sbjct 1351429 CACTGCAATCG-CAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAG--CTCCAACCTG 1351485 Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || ||||| ||||| || | | || || ||| || || || || || || ||| Sbjct 1351486 TGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTTTGCAACCTTGCCTCC 1351545 Query 19949 CTGTGCCTGCCGACTTTCGTCA------AGGCCTCCTCCTTCGACTTTGCCAAATTGTAC 20002 ||| ||||| ||||| ||| | | | | || |||||| || || || Sbjct 1351546 TTGTCTCTGCCCTCTTTCATCAACTATGAAGATGCTTGCTACGACTTCAAGAAGCTGCAC 1351605 Query 20003 GAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCG 20062 ||||| || | || || || ||| |||| ||||||| ||| ||||| Sbjct 1351606 GAGGTCACTCAAGTTGTTGTCCGCAATTTGAACAAGATCATCGACGTCAACCACTACCCT 1351665 Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122 | | | ||| || || || ||||| ||||| || || | | || || || || Sbjct 1351666 GTCCAAGAGGCTCGTAACAGCAACATGCGTCACCGACCCATTGGTCTTGGTGTTCAAGGT 1351725 Query 20123 CTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTC 20182 || || || | ||| | ||| || | | || || |||| |||| || ||||| Sbjct 1351726 CTCGCTGATGCCTTCCTTGCCCTCCGCATGCCCTTTGAGTCTCCCGAGGCTCGTGAGCTG 1351785 Query 20183 AACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTGGAATCGTGCGAACTCG 20240 |||||| ||||||||| || | ||||| || ||||| || | | |||| |||||| Sbjct 1351786 AACAAGCAAATCTTCGAGACCATCTACCATGCTGCCCTTACCACGTCT-GTGC-AACTCG 1351843 Query 20241 CCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCC 20300 |||| ||||| || || ||| || |||||||| || || || || |||||||| |||| Sbjct 1351844 CCAAGGAGGAAGGTCCCTACTCCACCTTCAAGGGTTCCCCTGCCTCTGAGGGTATTCTCC 1351903 Query 20301 AGCCGGACATGTGGGGCGTCA------CTGA-GAATGAGTTTTGGAGCGCCCTCAAGGTT 20353 || ||||||||| |||| |||| || | || ||| | ||||| | Sbjct 1351904 AGTTTGACATGTGGAATGTCAAGCCCTCTGATCTTTGGGATTGGGAAC-CCCTCCGAGAG 1351962 Query 20354 GAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCG 20413 || ||||||| ||||| | |||||| ||||||| || || ||||| |||||| Sbjct 1351963 GATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTGCTCCTATGCCTACCGCCAGT 1352022 Query 20414 ACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTAC 20470 ||| | ||||| | || ||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 1352023 ACCTCGCAGATTCTTGGCAACAACGAGTGCTTT-GAGCCTTACACCTCCAACATCTAC 1352079 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 || ||||| || ||||| | |||||||| ||| || || ||||||||| || | Sbjct 2145447 TCCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 2145388 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 || | | || ||||||||||| ||||||||||||||||| || ||||| || |||||| Sbjct 2145387 TTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAAC 2145328 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| || || ||||| || || Sbjct 2145327 GAGCTCATTTCTCGTGATGAGGGTCTTCA 2145299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524772573760