Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 219 5e-52 seq4 113 5e-20 >seq3 Length=7630574 Score = 219 bits (242), Expect = 5e-52 Identities = 514/770 (67%), Gaps = 22/770 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| || | ||||||| ||||| | || ||| |||||||| ||||||| Sbjct 1350700 CCGCAGCATATGATCATGCGAGTCGCTGTTGGGATCTGGGGTGACGATATTGAGCGTGTC 1350759 Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297 ||||| ||| || | ||| ||| |||| ||| || || || | || || ||| Sbjct 1350760 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTGT 1350817 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||||| ||||| || |||||| | || |||||||| || | |||||||| | Sbjct 1350818 TCAACGCCGGTACCCCACAGCCTCAGCTCTCATCATGCTTCCTTGTTGATATGAAGGAGG 1350877 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || || || || |||||||| || |||||| |||||| || |||||| | | | Sbjct 1350878 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 1350937 Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||||||| || | || | |||| ||||||| | ||| | ||| || || Sbjct 1350938 GTGGTATTGGCTTAAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 1350995 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || || || | || || || || ||||| || || ||||||||||| || || || Sbjct 1350996 CAATGGTACTTCCAACGGTATTGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 1351055 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 |||| ||||||||||| ||||| || | |||||||||||||| ||||| ||||| Sbjct 1351056 CGTCGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 1351115 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||||||| | | ||||| || || || || ||| || || | || ||| | ||| Sbjct 1351116 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTCCGCGC 1351175 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||||| ||||| ||||| || || || |||||| | || |||| | | Sbjct 1351176 TCGTGACCTGTTCCTGGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGGAA 1351235 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTG 53774 || || ||| || |||||||| ||||| ||||| || | | | | || |||||||| Sbjct 1351236 CGGCGAATGGACTCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTG-CTACGGTG 1351294 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGA 53828 | || ||| | | |||| | |||| | | | |||| ||| ||| Sbjct 1351295 ACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGGGTCGC------AAGT 1351348 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | || | ||| | || || || || |||| ||||| |||| | Sbjct 1351349 CTATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACTGGAAACC 1351408 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | | |||| |||||||||| ||| ||||||||||| |||||| Sbjct 1351409 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGCAACCAAAAGAAC 1351458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786 |||||| | ||| ||| |||||||||||| | ||| | || || | | ||| | Sbjct 1352231 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 1352289 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | ||| Sbjct 1352290 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 1352349 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 1352350 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 1352409 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 1352410 ATGTACTACCTCCGTAC 1352426 >seq4 Length=8011673 Score = 113 bits (124), Expect = 5e-20 Identities = 208/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||| |||| || | ||||| ||||| |||||||| || || | || || Sbjct 5319373 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 5319314 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| || | Sbjct 5319313 TTTCCACTGGGTTCTAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGC--AAGGC 5319256 Query 152146 ACAATCGTGCCCTGCAGACTCGCTT---CACCGTGGTGATACGCCGTCTGCTCCGCGATG 152202 |||| || |||| || | || |||||||||| || |||||||| || | | Sbjct 5319255 -CAATAATGGTCTGCTGAAGTGATTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACA 5319197 Query 152203 TATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA 152262 || || ||||| | | |||||| |||| | ||| || |||||| || ||||| Sbjct 5319196 TAACCTGCCAATTCAACAACCTTCTTGTCTTTAATCAAATTTCTCTTGAAGCACGCGTAG 5319137 Query 152263 ATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATG 152322 || || |||||||| ||||| || || |||| || ||||| || ||| || || Sbjct 5319136 ATGACTTTGCGCTGACCGGGTTTGAATCCATCCAGAACAGATGGAATAGATCGCATGTTG 5319077 Query 152323 TC 152324 || Sbjct 5319076 TC 5319075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215972639200