Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 1e-12 >seq3 Length=7630574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||| || || ||| |||||| || ||||| || || Sbjct 6114369 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6114428 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| ||||| || | ||||| |||||||| || Sbjct 6114429 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6114488 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| |||||| Sbjct 6114489 ATACCCTCCTTGTCCTGGATC-TTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 6114547 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| ||||| || || || | || || || |||||||||||| || Sbjct 6114548 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 6114599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729584656932