Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
>seq2
Length=8818970
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| || || || || ||||||||||| ||||||| || || || || | |
Sbjct 2563205 CCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCAT 2563146
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| || | || || | ||||| || ||||| ||||| || || || || || ||||
Sbjct 2563145 CTGATACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGATC 2563086
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| ||||| || || | ||||||||| || | || || | ||| | || || ||||
Sbjct 2563085 AGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACA 2563026
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || || ||||||||||| | ||| | || | || | || ||||| ||
Sbjct 2563025 ATATCCAGAAGGAGTCGACTCTCCATCTCGTCCTCCGCCTTCGTGGTGGTAT 2562974
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069
||||||||||| | || || ||||| || || | |||||| | || || | |||||
Sbjct 2562671 TGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCGACAACGTCAAGT 2562612
Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129
|| ||||| ||||| || || || || || || || ||||| || || | ||||||||
Sbjct 2562611 CCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGATTTTCGCCGGCA 2562552
Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189
| || | || ||| | ||| | ||||| |||||||| || ||||| || ||| | |
Sbjct 2562551 AGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAATCAACCCTTC 2562492
Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGG 27214
| |||| | ||| | || |||||
Sbjct 2562491 ACCTGGTCCTTCGTCTTCGTGGTGG 2562467
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || |||||| | || || ||||| || || | |||
Sbjct 2562975 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCATCC 2562916
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || || || || ||||| || || || ||
Sbjct 2562915 GACACTATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2562856
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||||||||| || | || ||| | ||| | || || ||||||
Sbjct 2562855 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCAGACTACAAC 2562796
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| | ||| | || | || | || ||||| ||
Sbjct 2562795 ATTCAGAAGGAGTCAACCCTTCATCTCGTCCTCCGCCTTCGTGGTGGTAT 2562746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918378254080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |