Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 5e-36
seq2 140 8e-28
seq1 125 2e-23
>seq3
Length=7630574
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | |||||| |||||||| || |||||||| || || |||||
Sbjct 6114374 ACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 6114433
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || |||||||| || || |||||||| || || ||||| || || | ||
Sbjct 6114434 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 6114493
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| || |||||||| || || ||||| ||
Sbjct 6114494 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 6114553
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||| |||||||| ||||| || || | ||||||
Sbjct 6114554 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595
Score = 93.3 bits (102), Expect = 1e-13
Identities = 187/271 (69%), Gaps = 10/271 (4%)
Strand=Plus/Minus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144
|||| |||||||||||||||||| | |||| || ||| ||||| ||||| ||
Sbjct 1351463 CCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 1351407
Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204
|||| ||| | || ||| | |||||| | |||||||| ||| || || || |
Sbjct 1351406 TTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGAC 1351347
Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264
|| | || || || |||||||||||| ||| || |||| ||||| || |||
Sbjct 1351346 TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAG 1351287
Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT-T 178323
||| | ||||| || || |||||||| | |||| |||| | ||| ||||| |
Sbjct 1351286 CAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGTCCATTCGCCG--TTCCTCT 1351229
Query 178324 C-ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353
| || || |||||||| || |||| | ||||
Sbjct 1351228 CGACACGCTTCATGAAAAGATCAGGGATCCA 1351198
>seq2
Length=8818970
Score = 140 bits (154), Expect = 8e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| |||||||| || || || || |||||||| || || | |||||
Sbjct 2562472 ACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 2562531
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| ||||| || | || || ||||||||||| | ||
Sbjct 2562532 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 2562591
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || ||||| ||||| ||||| || |||||||| ||
Sbjct 2562592 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAG 2562651
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| || || | ||||| ||
Sbjct 2562652 GGTGATGGTCTTGCCGGTCAAGGTCTTGAC 2562681
Score = 140 bits (154), Expect = 8e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || ||||| || ||||| || || ||||| || || | |||||
Sbjct 2562754 ACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT 2562813
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| ||||| || | || || ||||||||||| | ||
Sbjct 2562814 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCC 2562873
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||||||||| || || || ||||| ||||| || || ||||| ||
Sbjct 2562874 CTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACCTCAAG 2562933
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || ||||| ||||| || || | |||||
Sbjct 2562934 GGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || ||||| ||||| || ||||| || || || | |||||
Sbjct 2562982 ACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGT 2563041
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || ||||||||||| ||||| || | || || || || || || | ||
Sbjct 2563042 ACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGGATACC 2563101
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || || || ||||| || ||||| |||||||||||
Sbjct 2563102 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACCTCGAG 2563161
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || | ||||| || || | ||||||
Sbjct 2563162 GGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203
>seq1
Length=11717239
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | ||||| || ||||||||||| ||||||||
Sbjct 6373626 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6373567
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || || || || || | || ||||||||||||||||| || || || |||
Sbjct 6373566 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6373507
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| || || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 6373506 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6373448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151940593460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |