Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 167 5e-36 seq2 140 8e-28 seq1 125 2e-23 >seq3 Length=7630574 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||| |||||||| || |||||||| || || ||||| Sbjct 6114374 ACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 6114433 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || |||||||| || || ||||| || || | || Sbjct 6114434 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 6114493 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| || |||||||| || || ||||| || Sbjct 6114494 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 6114553 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| |||||||| ||||| || || | |||||| Sbjct 6114554 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 Score = 93.3 bits (102), Expect = 1e-13 Identities = 187/271 (69%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||||||||||||||| | |||| || ||| ||||| ||||| || Sbjct 1351463 CCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 1351407 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| ||| | || ||| | |||||| | |||||||| ||| || || || | Sbjct 1351406 TTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGAC 1351347 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | || || || |||||||||||| ||| || |||| ||||| || ||| Sbjct 1351346 TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAG 1351287 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT-T 178323 ||| | ||||| || || |||||||| | |||| |||| | ||| ||||| | Sbjct 1351286 CAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGTCCATTCGCCG--TTCCTCT 1351229 Query 178324 C-ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353 | || || |||||||| || |||| | |||| Sbjct 1351228 CGACACGCTTCATGAAAAGATCAGGGATCCA 1351198 >seq2 Length=8818970 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| |||||||| || || || || |||||||| || || | ||||| Sbjct 2562472 ACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 2562531 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || | || || ||||||||||| | || Sbjct 2562532 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 2562591 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||| ||||| || |||||||| || Sbjct 2562592 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAG 2562651 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || || | ||||| || Sbjct 2562652 GGTGATGGTCTTGCCGGTCAAGGTCTTGAC 2562681 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| || ||||| || || ||||| || || | ||||| Sbjct 2562754 ACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT 2562813 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || | || || ||||||||||| | || Sbjct 2562814 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCC 2562873 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || || || ||||| ||||| || || ||||| || Sbjct 2562874 CTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACCTCAAG 2562933 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | ||||| Sbjct 2562934 GGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || ||||| ||||| || ||||| || || || | ||||| Sbjct 2562982 ACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGT 2563041 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| ||||| || | || || || || || || | || Sbjct 2563042 ACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGGATACC 2563101 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || ||||| || ||||| ||||||||||| Sbjct 2563102 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAACCTCGAG 2563161 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| || || | |||||| Sbjct 2563162 GGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203 >seq1 Length=11717239 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 6373626 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6373567 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || || || || || | || ||||||||||||||||| || || || ||| Sbjct 6373566 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6373507 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 6373506 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6373448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151940593460