Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 140 8e-28 seq1 111 4e-19 >seq3 Length=7630574 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| || ||||| || || |||| ||||| ||| || || Sbjct 6114374 ACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 6114433 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||||||||| || ||||| || || ||||| Sbjct 6114434 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 6114493 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || || |||||||| || | ||||| || | Sbjct 6114494 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 6114553 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| ||||| | || || | ||| | ||||| Sbjct 6114554 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 Score = 98.7 bits (108), Expect = 2e-15 Identities = 177/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || |||||| |||| ||| | | || ||||||| ||||| || | || ||| Sbjct 1351454 TTTTGGTTGCTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCT 1351395 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || | |||||| | |||||| | ||||| || | | | | | |||| Sbjct 1351394 GTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTA 1351335 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || || |||||||||||||||||||| ||||||| || | |||||| || | ||| Sbjct 1351334 CCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGA 1351275 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || ||| || ||||| | |||| |||| || || | || || || | ||||||| Sbjct 1351274 CCAGGGCATTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATG 1351215 Query 193740 AAGAGGTCAGATGTCCAAA 193758 || || |||| |||||| Sbjct 1351214 AAAAGATCAGGGATCCAAA 1351196 >seq1 Length=11717239 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | |||| ||||| || |||||||| || |||||||| Sbjct 6373626 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6373567 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || || || || || || || |||||||| |||||||| ||| ||| ||| Sbjct 6373566 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6373507 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| || | || || || | ||||| ||||||||||||| || || | ||| Sbjct 6373506 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6373448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531138882776