Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3 159 5e-34
>seq3
Length=7630574
Score = 159 bits (176), Expect = 5e-34
Identities = 460/699 (66%), Gaps = 14/699 (2%)
Strand=Plus/Minus
Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744
|| || || || ||||| || ||||||| || | | |||| || ||||| || ||
Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485
Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTC 77803
|| || | | ||| || || || || | |||||||||||| |||||| ||| ||
Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGA-TC 1351426
Query 77804 CTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 77863
||| || || || || || | || || || |||| | || | ||| | | ||| |
Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1351367
Query 77864 GACTCT-AGCTTTTATCATAGATTTGTATCGCCT---CTCTCTTTCATA--TTGAGTATA 77917
| ||| ||| || || ||| ||| | | | |||||| || || || ||| |
Sbjct 1351366 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1351310
Query 77918 TAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACAT 77977
|||| |||||||| || || | ||| | | ||||||||||| || ||||||||
Sbjct 1351309 GAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1351252
Query 77978 CAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGC 78037
| | ||| || || | || || || ||||| || |||||||| ||||| |||||
Sbjct 1351251 GAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1351192
Query 78038 AATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAA 78097
| || || || || | | || || ||||| |||||| ||||| || ||
Sbjct 1351191 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAA 1351132
Query 78098 CTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATT 78157
||| | | || | |||||||| || || || || || | | |||||||| || ||
Sbjct 1351131 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1351072
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| ||||| || | || | || ||||| || | || | || ||| |||| ||||||
Sbjct 1351071 ACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1351012
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
||| || || ||||| || || | || ||| ||| | || || || |
Sbjct 1351011 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTT 1350952
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
|| || || || || |||||||| || || | || ||| || | |||||||||||
Sbjct 1350951 TAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 1350892
Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACA 78376
||| || || ||||| ||| |||| | || ||| || ||
Sbjct 1350891 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCA 1350853
Score = 140 bits (154), Expect = 5e-28
Identities = 369/561 (66%), Gaps = 12/561 (2%)
Strand=Plus/Plus
Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199
||| ||||| ||| |||||||| ||||| | | ||| | ||||| ||||| | ||
Sbjct 2145283 ACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAG 2145342
Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259
||| ||||| || ||||| || |||||||| || || | || || | || |||||
Sbjct 2145343 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2145402
Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---GTAACTGGCTTCGTTGTG 48316
|| || || ||||| ||||| || ||| | || | | || | | || ||
Sbjct 2145403 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTG 2145462
Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
||||| || |||||||| |||||||| | ||||| || || || | || ||
Sbjct 2145463 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 2145522
Query 48377 AAAGAGAAAGtttttttCATTGCTA---TCTTTAACGTAAGTATCTATTAAAAGACTATA 48433
||||| || | | | | | || || | ||| ||||| || | || ||
Sbjct 2145523 GAAGAG---GTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTA 2145579
Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493
|||||||||| || || || || ||||| || || || || |||| || || |
Sbjct 2145580 TGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGG 2145639
Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553
|||||| ||||| | ||||| ||| | | |||||||| || || || || ||
Sbjct 2145640 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGC 2145699
Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATT 48610
||| || || || | | || || || |||| |||| ||||||| | || ||
Sbjct 2145700 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTT 2145759
Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
|||||| | || ||| || || | ||| | || ||||||||||| || || ||||||||
Sbjct 2145760 CCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGC 2145819
Query 48671 TTTTTTATACATATTCCATAT 48691
|| || ||||| | ||| ||
Sbjct 2145820 CTTCTTGTACATTTGCCAGAT 2145840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668765266560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |