Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 172 8e-38 >seq3 Length=7630574 Score = 172 bits (190), Expect = 8e-38 Identities = 602/926 (65%), Gaps = 18/926 (2%) Strand=Plus/Minus Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 || || || || ||||| || ||||||| || | |||| || ||||| ||||| Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTC 76398 || || | ||| || ||||| || | |||||||||||| || || ||| || Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGA-TC 1351426 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 ||| || || | || || ||||||| || |||| | || | ||| | | ||| | Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1351367 Query 76459 GACTCT-AGCTTTTATTATAGATTTGTATCGCTT---CTCTCTTTCATATTGT--GTATA 76512 | ||| ||| || || ||| ||| | ||| |||||| || || | | ||| | Sbjct 1351366 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1351310 Query 76513 TAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACAT 76572 | || |||||||| || || | ||| | | |||||| ||||| || || ||||| Sbjct 1351309 GAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1351252 Query 76573 CAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGC 76632 | | ||| || || | || || || ||||| || |||||||| ||||| ||||| Sbjct 1351251 GAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1351192 Query 76633 AATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAA 76692 | || || || || | | || || ||||| |||||| ||||| ||||| Sbjct 1351191 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAA 1351132 Query 76693 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATT 76752 ||| | | || | |||||||| || || || || || | |||| ||||| || || Sbjct 1351131 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1351072 Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| ||||| || | || | |||||||| || | || | || ||| |||| ||| || Sbjct 1351071 ACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1351012 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||| || |||||||| || || | || ||| ||| ||||| || | | | Sbjct 1351011 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 1350953 Query 76873 T-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | | ||| || || || ||||| || || || | ||||| || | || || |||| Sbjct 1350952 TTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 1350893 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991 | || || || || || ||| |||| | || ||| || || || | ||| | || Sbjct 1350892 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTG 1350833 Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 || || || || ||||| || || ||||||||||| | || || | || | Sbjct 1350832 GGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGT 1350773 Query 77052 TGTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATC 77110 ||||||| || | || || ||||| || || | || |||||||| ||||| Sbjct 1350772 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA-TCCCAACAGCGACTCGCATG 1350714 Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 | ||||||||| || || || || | ||| | || | | |||||||||| | | Sbjct 1350713 ATCATATGCTGCGGGCGCTCAGCAATTTTACCGTCAATCTGTAGCAAGTATGATCTGGAC 1350654 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTA 77196 | ||| || |||||||||||||| Sbjct 1350653 AGGGTTCGGAAGCCAAAATAGTTGTA 1350628 Score = 114 bits (126), Expect = 2e-20 Identities = 371/571 (65%), Gaps = 10/571 (2%) Strand=Plus/Plus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| ||| ||||| || ||||| | | ||| | ||||| ||||| | || Sbjct 2145283 ACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAG 2145342 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || |||||||| |||||||| || || | || || | || ||||| Sbjct 2145343 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2145402 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCATCATTATG 46805 || || || || || || || || ||||| | || | | || | | | || Sbjct 2145403 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTG 2145462 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| | |||||||| ||||| || | ||||| || || || | || || Sbjct 2145463 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 2145522 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||||| | | | || || || | || ||||| || | || || | Sbjct 2145523 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 2145582 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| || || ||||| || || ||||| || || || || |||| || || | || Sbjct 2145583 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 2145642 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAG 47044 ||| ||||| | ||||| ||| |||| |||||||| || || || || |||| Sbjct 2145643 CTGGACCTCGCCGCTGAATCGCTCA-ACAAGGTTCTCATTGACGATGCCGTCGGAGGCAG 2145701 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCC 47101 | || || || | | || || || |||| || || | ||||| | || |||| Sbjct 2145702 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCC 2145761 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 |||| | || ||| || || | ||| | || |||||||||||||| || |||||||| | Sbjct 2145762 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2145821 Query 47162 TTTTATACATATTCC--ATATATCACGATAT 47190 | || ||||| | || || ||||| || || Sbjct 2145822 TCTTGTACATTTGCCAGATCTATCAGGAAAT 2145852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934364353280