Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3 172 8e-38
>seq3
Length=7630574
Score = 172 bits (190), Expect = 8e-38
Identities = 602/926 (65%), Gaps = 18/926 (2%)
Strand=Plus/Minus
Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339
|| || || || ||||| || ||||||| || | |||| || ||||| |||||
Sbjct 1351544 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1351485
Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTC 76398
|| || | ||| || ||||| || | |||||||||||| || || ||| ||
Sbjct 1351484 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGA-TC 1351426
Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458
||| || || | || || ||||||| || |||| | || | ||| | | ||| |
Sbjct 1351425 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1351367
Query 76459 GACTCT-AGCTTTTATTATAGATTTGTATCGCTT---CTCTCTTTCATATTGT--GTATA 76512
| ||| ||| || || ||| ||| | ||| |||||| || || | | ||| |
Sbjct 1351366 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1351310
Query 76513 TAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACAT 76572
| || |||||||| || || | ||| | | |||||| ||||| || || |||||
Sbjct 1351309 GAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACAT 1351252
Query 76573 CAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGC 76632
| | ||| || || | || || || ||||| || |||||||| ||||| |||||
Sbjct 1351251 GAGAGTCCATTCGCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1351192
Query 76633 AATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAA 76692
| || || || || | | || || ||||| |||||| ||||| |||||
Sbjct 1351191 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAA 1351132
Query 76693 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATT 76752
||| | | || | |||||||| || || || || || | |||| ||||| || ||
Sbjct 1351131 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1351072
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
||| ||||| || | || | |||||||| || | || | || ||| |||| ||| ||
Sbjct 1351071 ACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACC 1351012
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
||| || |||||||| || || | || ||| ||| ||||| || | | |
Sbjct 1351011 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 1350953
Query 76873 T-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931
| | ||| || || || ||||| || || || | ||||| || | || || ||||
Sbjct 1350952 TTAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 1350893
Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991
| || || || || || ||| |||| | || ||| || || || | ||| | ||
Sbjct 1350892 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTG 1350833
Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051
|| || || || ||||| || || ||||||||||| | || || | || |
Sbjct 1350832 GGGTACCGGCGTTGAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGT 1350773
Query 77052 TGTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATC 77110
||||||| || | || || ||||| || || | || |||||||| |||||
Sbjct 1350772 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA-TCCCAACAGCGACTCGCATG 1350714
Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170
| ||||||||| || || || || | ||| | || | | |||||||||| | |
Sbjct 1350713 ATCATATGCTGCGGGCGCTCAGCAATTTTACCGTCAATCTGTAGCAAGTATGATCTGGAC 1350654
Query 77171 AAAGTTTTAAAACCAAAATAGTTGTA 77196
| ||| || ||||||||||||||
Sbjct 1350653 AGGGTTCGGAAGCCAAAATAGTTGTA 1350628
Score = 114 bits (126), Expect = 2e-20
Identities = 371/571 (65%), Gaps = 10/571 (2%)
Strand=Plus/Plus
Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688
||| ||||| ||| ||||| || ||||| | | ||| | ||||| ||||| | ||
Sbjct 2145283 ACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAG 2145342
Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748
|||||||| || |||||||| |||||||| || || | || || | || |||||
Sbjct 2145343 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2145402
Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCATCATTATG 46805
|| || || || || || || || ||||| | || | | || | | | ||
Sbjct 2145403 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTG 2145462
Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865
||||| | |||||||| ||||| || | ||||| || || || | || ||
Sbjct 2145463 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 2145522
Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925
||||| | | | || || || | || ||||| || | || || |
Sbjct 2145523 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 2145582
Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985
||| || || ||||| || || ||||| || || || || |||| || || | ||
Sbjct 2145583 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 2145642
Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAG 47044
||| ||||| | ||||| ||| |||| |||||||| || || || || ||||
Sbjct 2145643 CTGGACCTCGCCGCTGAATCGCTCA-ACAAGGTTCTCATTGACGATGCCGTCGGAGGCAG 2145701
Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCC 47101
| || || || | | || || || |||| || || | ||||| | || ||||
Sbjct 2145702 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCC 2145761
Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161
|||| | || ||| || || | ||| | || |||||||||||||| || |||||||| |
Sbjct 2145762 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2145821
Query 47162 TTTTATACATATTCC--ATATATCACGATAT 47190
| || ||||| | || || ||||| || ||
Sbjct 2145822 TCTTGTACATTTGCCAGATCTATCAGGAAAT 2145852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712934364353280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |