Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 seq1 98.7 2e-15 seq2 86.0 1e-11 >seq3 Length=7630574 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || ||||| || ||||||||||| ||| | || | ||||| Sbjct 6114383 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 6114442 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || |||||||| | ||||||||||| | ||| || ||||| || Sbjct 6114443 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 6114502 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 6114503 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 6114562 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||| | |||||| Sbjct 6114563 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 Score = 102 bits (112), Expect = 2e-16 Identities = 191/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698 |||||| |||||||||| |||||||| ||| || ||||| |||| ||| | | Sbjct 1351196 TTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGGAACGGCGAATGGACTCTCATGT 1351255 Query 115699 GTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTACG 115758 | ||||| ||| ||||||||||| ||| || ||| || |||||| ||| |||| Sbjct 1351256 GCCCCAACGAATGCCCTGGTCTTGCTGACTGCTACGGTGACGAATTTGAGGCTCTGTACG 1351315 Query 115759 AAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTGGCAT 115817 ||| |||||||| |||||| ||| | | || | | | ||||| || | |||||| | Sbjct 1351316 AAAAGTACGAGAGAGAGGGTAAGGGTCGCAA-GTCTATCAAGGCTCAGAAGCTTTGGTAC 1351374 Query 115818 CATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGC-GTACAAAGATGCAGT 115876 || |||| | ||| ||||| |||| |||||| ||| ||||| ||| || | Sbjct 1351375 GCCATTCTTGAGGCCCAGACAGAGACTGGAA-ACCCTTTCATGCTCTACAAGGAT-CACT 1351432 Query 115877 -TTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908 ||| |||||||| |||||||| | |||| Sbjct 1351433 GCAATCGCAAGAGCAACCAAAAGAACCTTGGTA 1351465 >seq1 Length=11717239 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | |||| ||||| || || || ||||||||||| Sbjct 6373626 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6373567 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | |||||| |||| | ||| || ||||| || || || || |||||| | || Sbjct 6373566 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6373507 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| ||| ||| || || || || || || |||||||| || ||||||||||| Sbjct 6373506 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6373448 >seq2 Length=8818970 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || || || || ||||||||||| |||| | |||| || || Sbjct 2562482 AGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 2562541 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || | | ||||||||| | | ||| || ||||| || Sbjct 2562542 TCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 2562601 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||| | || | |||| || ||| || ||||| || || || Sbjct 2562602 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTC 2562661 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 ||||| || | ||||| |||| Sbjct 2562662 TTGCCGGTCAAGGTCTTGACGA 2562683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820740866684