Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 163 6e-35 seq2 158 3e-33 seq1 147 5e-30 >seq3 Length=7630574 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| Sbjct 6114368 ACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 6114427 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 6114428 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 6114487 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 6114488 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 6114547 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 6114548 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6114595 Score = 120 bits (132), Expect = 6e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226 |||| || | ||| | | ||| |||||||| | ||| ||| | ||||| ||| Sbjct 2145227 TCACCGATGCCGTTTCTATTGAGCAGGAGTTCCTCACCGAGGCTCTCCCTTGTGCTCTGC 2145168 Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||||||||| | | |||||| ||| || ||||||||||| || ||||| | ||| Sbjct 2145167 TCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCCGATCGCCTCCTCG 2145108 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 |||| || || ||||||| ||||| || |||| ||||| |||| || |||||| || Sbjct 2145107 TGGCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACA 2145048 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 | || || || || || ||||||||||| ||||| || || || || | | ||| Sbjct 2145047 TCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCG 2144988 Query 230407 GTGT 230410 |||| Sbjct 2144987 GTGT 2144984 >seq2 Length=8818970 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| ||||| || | || ||| || |||||||||||||| | Sbjct 2562467 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 2562526 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| || ||||| || || |||||| || Sbjct 2562527 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2562586 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||| | || ||| | ||||||||||| || | || || Sbjct 2562587 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACC 2562646 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || ||||| ||||| |||| Sbjct 2562647 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 2562683 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | || || || ||||| |||||||| | Sbjct 2562976 ACCACCACGAAGGCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGA 2563035 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||| || ||||| || || || || || Sbjct 2563036 GAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGG 2563095 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| | || || | |||||||| || || | || || Sbjct 2563096 GATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCAAC 2563155 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 2563156 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2563203 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | || || || || ||||||||||| | Sbjct 2562748 ACCACCACGAAGGCGGAGGACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGA 2562807 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| || ||||| || || |||||| || Sbjct 2562808 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 2562867 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || |||||||| | || || | ||||||||||| || | ||||| Sbjct 2562868 GATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGAC 2562927 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 2562928 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 >seq1 Length=11717239 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || ||||| |||||| Sbjct 6373626 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6373567 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || || || ||||||||||| |||||||| | || || | ||| Sbjct 6373566 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6373507 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||||| ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 6373506 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6373448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739146354616