Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 141 7e-29 seq2 123 2e-23 seq1 113 3e-20 >seq3 Length=7630574 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| ||||||||||| ||| || ||| | || || Sbjct 6114387 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6114446 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | ||| ||||| ||| Sbjct 6114447 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 6114506 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 6114507 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6114566 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||||||||| ||||| || ||||||||| Sbjct 6114567 CCCGTGAGGGTCTTGACGAAAATCTGCATGATG 6114599 >seq2 Length=8818970 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || |||||| || |||||||| || | ||| || |||| || Sbjct 2562767 ACGAGATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGGCCGTCCTCG 2562826 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| |||||||| || | ||| | || ||||| ||| Sbjct 2562827 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 2562886 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| || || ||||| | || || |||| Sbjct 2562887 ATCTTGGACTTGACATTGT--CGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCT 2562944 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||||||||| Sbjct 2562945 TGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2562975 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || ||||| ||||||||||| |||| ||| || |||| || Sbjct 2562485 ACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 2562544 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 2562545 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 2562604 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||||| || || ||||| | || || ||||| Sbjct 2562605 ATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCAACCTCAAGGGTGATGGTCTTG 2562664 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || || | |||||| |||| Sbjct 2562665 CCGGTCAAGGTCTTGACGA 2562683 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||| ||||| || | ||| || | || || |||||||| ||||| || Sbjct 2563012 CTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 2563071 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 ||||| ||||||||||| | || | ||| ||||| ||| ||||| ||| || | Sbjct 2563072 AATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATT 2563131 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || || || | || || ||||| | ||||| ||||| || || | |||||| Sbjct 2563132 GT--CGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTG 2563189 Query 44324 ACGAAGATTTGCATGATG 44341 |||||||| |||||| || Sbjct 2563190 ACGAAGATCTGCATGGTG 2563207 >seq1 Length=11717239 Score = 113 bits (124), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| ||||| |||| Sbjct 6373628 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 6373569 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| ||||||||||| | || | || ||||| ||| ||||| ||| || ||| Sbjct 6373568 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6373509 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | || || ||||| | || || ||||| ||||| ||||||||||| Sbjct 6373508 --CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 6373451 Query 44326 GAA 44328 ||| Sbjct 6373450 GAA 6373448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990382450468