Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016-
08-12] 4 sequences; 36,178,456 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3 154 4e-32
seq1 140 8e-28
seq2 138 3e-27
>seq3
Length=7630574
Score = 154 bits (170), Expect = 4e-32
Identities = 158/205 (77%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 6114592 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 6114533
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 6114532 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 6114473
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 6114472 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 6114413
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 6114412 CAGAAGGAGTCCACCCTTCA-CTTG 6114389
Score = 89.7 bits (98), Expect = 1e-12
Identities = 181/262 (69%), Gaps = 10/262 (4%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179
|||| ||| || |||||||| ||||| ||| || ||| ||||| ||||||||
Sbjct 1351463 CCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 1351407
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238
|||| ||| || || |||||||| | ||| || | || ||||| | |||
Sbjct 1351406 TTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGAC 1351347
Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297
|| | | ||| ||||| | ||||||||||| || |||| ||||||||| |||||
Sbjct 1351346 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 1351289
Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357
|| ||| ||||||| || ||||||||||| | ||| |||||| || || |
Sbjct 1351288 AGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGTCCATTCGCCGTTCCTCT 1351229
Query 214358 TGACTCTTTTCATGAAAAGGTC 214379
||| | ||||||||||| ||
Sbjct 1351228 CGACACGCTTCATGAAAAGATC 1351207
>seq1
Length=11717239
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || || ||||||||
Sbjct 6373447 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 6373506
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| |
Sbjct 6373507 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 6373566
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 6373567 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 6373626
>seq2
Length=8818970
Score = 138 bits (152), Expect = 3e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || | || || || || |||||||| ||||| || || ||||| ||||
Sbjct 2562683 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGACACTATCG 2562624
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| |||||||||||||| || || |||||||| |||||||| ||| | |
Sbjct 2562623 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGA 2562564
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| |||||||| || |||||||| || || | || || |||| || ||| |||| || |
Sbjct 2562563 TTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 2562504
Query 178111 AATCAACACTGCATCTTGT 178129
||||||| || || || ||
Sbjct 2562503 AATCAACCCTTCACCTGGT 2562485
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || || ||||||||||| || || ||
Sbjct 2563200 CAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCTGAT 2563141
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || ||||| ||||| |||||
Sbjct 2563140 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAGCAG 2563081
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || |||||||| || |||||||| ||||| | || || | || || || ||
Sbjct 2563080 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAATATC 2563021
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 2563020 CAGAAGGAGTCGACTCTCCATCTCGT 2562995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731138308776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |