Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq17 118 1e-21 >seq17 Length=315547 Score = 118 bits (130), Expect = 1e-21 Identities = 548/858 (64%), Gaps = 25/858 (3%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| ||| |||||| || ||||||||||| || ||||| | ||||| || |||| Sbjct 168910 TTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCT 168969 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| || || || || || || || | | || | | |||| || | ||| Sbjct 168970 CCATGAAGTCGAAGGGGTTTGTGGCCTTGTACACCTTCTC-ATTACCG-AGAGCAACGAG 169027 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | ||| || || || || || || || ||| | | | ||||||| |||| ||| Sbjct 169028 CAGACGATCAGCCACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTAGAAG 169087 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || || ||||| || || | || ||||| || ||| || || | || || Sbjct 169088 ACCACAAGGGAGAGCCTCGGTAAGGAACTCCTGCTCGATGGTAACGGCATCGGTGATGAT 169147 Query 16912 A--CTAG--CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967 || | || || || || | ||| ||||| || | ||||| | Sbjct 169148 GTCCTGGATCATCTGCTTGCTGGCACGTCCC----TTAAGGTGAGAGTGGAGGAGACAGG 169203 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | |||||| || | ||||| || | | ||| || ||||| || || |||| || | Sbjct 169204 CAAAATCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 169263 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || ||||| | ||| || || | ||| || | || ||||| |||| Sbjct 169264 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATAC 169323 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| || | ||||| || | | |||| || | | | ||| |||| | |||| Sbjct 169324 CCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCC 169383 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTT---ATGCAATCCATCGTTTCTATGGCCTTAA 17204 || |||| || || || |||| |||||| || || || | ||| || | Sbjct 169384 ATCGAATGGCCCAGTCAGCCTT---CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGA 169440 Query 17205 ATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 | | | | || || | ||| || | || || ||||| ||||| ||| ||| | Sbjct 169441 AGAGGTA-TGTTCTTTGGGCAGGCTCCTTGATGTAGGTATCAATGAGCAGGGAGTATGTC 169499 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 || ||||| ||||||||||| ||||| || ||||| |||||||| || || | || Sbjct 169500 TCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 169559 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || || || || |||||| || | || || ||||| ||||| || ||| || ||| Sbjct 169560 TGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCGGAGGCAGCG 169619 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAAC----GCGCCA 17439 || || || | || || ||||| | | || || | || | ||| | ||| Sbjct 169620 AAGAAAGCAAGAATGTGGGAGATGAAGAACTGCTCATCTGTAGTCA-AACGGTTGTTCCA 169678 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 ||| | | ||| ||||| | ||| | || |||| ||||| || ||| ||||||| Sbjct 169679 GTCGTGGAGATCCTTGGAAAGATCAATCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTT 169738 Query 17500 TTTATACATATTCCAAAT 17517 || ||||| | ||| || Sbjct 169739 CTTGTACATTTGCCAGAT 169756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539382983480