Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq17 143 5e-29 seq118 104 5e-17 seq547 102 2e-16 seq3 95.1 2e-14 >seq17 Length=315547 Score = 143 bits (158), Expect = 5e-29 Identities = 539/833 (65%), Gaps = 37/833 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| | |||||||| ||||||||||||||||||||||||| Sbjct 168933 TCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 168992 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| || || || || |||| | || || ||||| ||||| | Sbjct 168993 GCCTTGTACACCTTCTCATTACCGAGAGCAACGAGCAGACGATCAGCCACGAACTCGATG 169052 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | | || |||||| | ||||| | | Sbjct 169053 TACTGCTTCATGAGGTTGGAGTTCATGCCTAGAAGACCACAAGGGAGAGCCTCGGTAAGG 169112 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| ||| ||| ||| || || | || ||| ||| ||| | | | | Sbjct 169113 AACTCCTGCTCGATGGTAACGGCATCGGTGATGATGTCCTGGATCATCTGCTTGCTGGCA 169172 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | || || | |||| ||||| | |||| | ||| |||||||| || Sbjct 169173 CGTC----CCTTAAGGTGAGAGTGGAGGAGACAGGCAAAATCGGTGTGAAGACCCTCATC 169228 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| ||||||||| | ||| |||||||| | ||||| ||| ||||||| Sbjct 169229 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 169288 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | |||||| ||| | | |||||||| Sbjct 169289 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAG 169348 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCC 252030 || | |||||| || ||||||||| | | ||| || ||||| | ||| Sbjct 169349 ACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAA----TG-GCCCAGTCAGCC 169403 Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG 252090 ||||||| | || || || || | || | ||||| | | | | |||| Sbjct 169404 TTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTTCTTTGGGCAGGC 169463 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150 |||| |||| | ||||| || || ||||| |||| || |||||| || | | Sbjct 169464 TCCTTGATGTAGGTATCAATGAGCAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 169523 Query 252151 ATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTT--CCGTGGAAAAGT 252205 |||||| || | |||| || || | ||| || || | ||| | ||| ||| | Sbjct 169524 ATCTGGAAACCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTCGCCGCTGAATCG- 169579 Query 252206 TGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCT 252265 | ||| |||||| | || || |||||| | | || ||||| |||||||| Sbjct 169580 -CTCAACAAGGTTCTCGTTGACGATACCATCGGAGGCAGCGAAGAAAGCAAGAATGTGGG 169638 Query 252266 TGATGAAGTGACGCTCATC-GTCGTTGA--GCTTGTCACGCCAGTCGGCAATGTCCTGAT 252322 ||||||| ||||||| || || | | |||| ||||||| | |||| Sbjct 169639 AGATGAAGAACTGCTCATCTGTAGTCAAACGGTTGT---TCCAGTCGTGGAGATCCTTGG 169695 Query 252323 TCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 ||| || || || | |||||||| | || | | ||||||||||||||| Sbjct 169696 AAAGATCAATCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATT 169748 >seq118 Length=122450 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||||||||| ||||| || || || || || ||||| |||| |||||||||||| Sbjct 57937 ATTGGACCCAACGGTGCTGGAAAATCGACACTCATCAAGCTCCTTACTGGCGAGACCATT 57996 Query 280236 GCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | | | || ||| |||||| |||||| |||| || | |||| || |||||| Sbjct 57997 CCTAGTACCGGAAAGGTTGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCAC 58056 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||| | | ||| | |||| ||| |||| | || |||||||| ||| |||||||||| Sbjct 58057 GCTCTGGAGCACGTTGAGATGCACTTGGAGAAAACCCCTAACCAGTACCTTCAGTGGCGT 58116 Query 280356 TA 280357 || Sbjct 58117 TA 58118 >seq547 Length=561 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 337 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 278 Query 142563 CCCCAC 142568 |||||| Sbjct 277 CCCCAC 272 >seq3 Length=622283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 508259 GGTGAGGATCTCTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 508200 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| |||||||||| | || || ||||| ||||||||| || | Sbjct 508199 CAGACTCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 508140 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 508139 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 508081 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 508080 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 508035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824144438201