Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17 123 6e-23 seq81 114 3e-20 seq126 104 6e-17 >seq17 Length=315547 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || ||||| | ||| | |||||| || || ||| |||| ||| | | | || Sbjct 169138 GATGCCGTTACCATCGAGCAGGAGTTCCTTACCGAGGCTCTCCCTTGTGGTCTTCTAGGC 169079 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| || | |||||||| || || ||||| ||||||||||||||| | || || Sbjct 169078 ATGAACTCCAACCTCATGAAGCAGTACATCGAGTTCGTGGCTGATCGTCTGCTCGTTGCT 169019 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 |||||| ||||||| |||||||| | | || ||||||| ||| ||||| || || Sbjct 169018 CTCGGTAATGAGAAGGTGTACAAGGCCACAAACCCCTTCGACTTCATGGAGAACATCTCT 168959 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 || | || ||||| ||||| ||||| ||||| || |||||| ||| Sbjct 168958 CTTGGTGGCAAGACCAACTTTTTCGAGAAGCGCGTTGCCGACTACCAA 168911 >seq81 Length=153540 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | || ||||||||||| || ||||| | | Sbjct 143876 CCACCACGAAGGCGAAGCACAAGGTGGAGAGTCGACTCTTTTTGGATGTTGTAGTCAGAG 143817 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||| |||| ||||| || | || Sbjct 143816 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 143757 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || | || || || || |||| ||| || || || Sbjct 143756 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCGACC 143697 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 143696 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGATG 143646 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | ||| || || || | || ||||||||||| || |||||| Sbjct 144161 TGACCACCACGAAGACGAAGCACAAGGTGGAGAGTCGACTCTTTTTGGATGTTGTAGTCG 144102 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || || || | || || || |||||||| || ||||| || | Sbjct 144101 GAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCAGGA 144042 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || |||||||| || | || ||||| || |||| ||| || || Sbjct 144041 GGAATACCTTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATAGTATCAGATGACTCG 143982 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 || || || || || ||||| || || || |||||||||| || Sbjct 143981 ACCTCAAGGGTAATGGTCTTGCCAGTAAGGGTCTTGACGACTA 143939 >seq126 Length=117423 Score = 104 bits (114), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || ||||| || |||||| Sbjct 31079 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 31020 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| || || ||| Sbjct 31019 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGG---TCCGGG 30963 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 30962 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCC 30903 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || |||||||||||||| || || ||||||||||| |||||||| ||| Sbjct 30902 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 30849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639875136558