Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17 125 2e-23 seq3 84.2 5e-11 >seq17 Length=315547 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || ||| | ||| |||| ||| || ||| ||| | || || | Sbjct 169147 ATCATCACCGATGCCGTTACCATCGAGCAGGAGTTCCTTACCGAGGCTCTCCCTTGTGGT 169088 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | ||||||||||| | |||||| ||||||||||| ||||| || || || | Sbjct 169087 CTTCTAGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTCGTGGCTGATCGTCTG 169028 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || || ||| ||||||| |||||||| ||| |||||||| | ||| |||||| Sbjct 169027 CTCGTTGCTCTCGGTAATGAGAAGGTGTACAAGGCCACAAACCCCTTCGACTTCATGGAG 168968 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || ||| || || || ||||| ||||| ||||| || Sbjct 168967 AACATCTCTCTTGGTGGCAAGACCAACTTTTTCGAGAAGCGCGT 168924 >seq3 Length=622283 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| || |||||||| || || || || || | || Sbjct 508086 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 508145 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || |||||||| || | |||||||| ||| || | || | ||| || Sbjct 508146 GTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGGAGATGAGTCTGGTTGAG 508205 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || |||| || || ||||| || ||| | || ||||||||||| Sbjct 508206 AAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAGAGATCCTCACC 508259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102866420445350