Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq126 118 1e-21 seq17 105 7e-18 >seq126 Length=117423 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || ||||| | | Sbjct 31046 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 30987 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 30986 AAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 30927 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 30926 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 30867 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 30866 ACGAAAATCTGCATG 30852 >seq17 Length=315547 Score = 105 bits (116), Expect = 7e-18 Identities = 264/400 (66%), Gaps = 17/400 (4%) Strand=Plus/Minus Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||||||| ||||||| | | || | | ||| | ||||| || ||||| ||| ||| Sbjct 169304 CTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCCAA 169245 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558 |||| | || || || || || || || ||||| || ||||| || |||| ||| | Sbjct 169244 CGAGCTCATCTCCCGTGATGAGGGTCTTCACACCGATTTTGCCTGTCTCCTCCACTCTCA 169185 Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617 | | | | |||| | | || | | | ||||| | ||| ||| || | Sbjct 169184 CCTTAAGGGACGTGCCAGCAA----------GCAGATGATCCAGGACATCATCACCGATG 169135 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || | ||||| ||||||| |||| | || || || | || || ||||||| Sbjct 169134 CCGTTACCATCGAGCAGGAGTTCCTTACCGAGGCTCTCCCTTGTGGTCTTCTAGGCATGA 169075 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 || | | |||| ||||||||||||| ||||| ||||||||| | || |||| Sbjct 169074 ACTCCAACCTCATGAAGCAGTACATCGAGTTCGTGGCTGATCGTCTGCTCGTTGCTCTCG 169015 Query 52738 GGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 | | ||| | ||| || || || || || || ||| | ||||| || |||| Sbjct 169014 GTAATGAGAAGGTGTACAAGGCCACAAACCCCTTCGACTTCATGGAGAACATCTCTCTTG 168955 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||| || | ||| || Sbjct 168954 GTGGCAAGACCAACTTTTTCGAGAAGCGCGTTGCCGACTA 168915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256438647920