Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq126 122 8e-23 seq82 118 1e-21 seq17 102 8e-17 seq81 100 3e-16 >seq126 Length=117423 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 31049 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 30990 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 30989 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 30930 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 30929 ACGTTGT-CAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 30871 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 30870 CTTGACGAAAATCTGCATG 30852 >seq82 Length=153091 Score = 118 bits (130), Expect = 1e-21 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 10438 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCA 10379 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||| || || || || ||||||||||||||| ||| || |||| Sbjct 10378 GCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 10319 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| |||||| |||| ||| | || ||||| ||||| || Sbjct 10318 ACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 10259 Query 127097 TTTACAAAAATCTGCATGG 127115 || || ||| ||| |||| Sbjct 10258 TTCACGAAA--CTGGATGG 10242 >seq17 Length=315547 Score = 102 bits (112), Expect = 8e-17 Identities = 242/364 (66%), Gaps = 19/364 (5%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| || || || || ||||||||| ||||| | || || || || |||||| | Sbjct 169267 ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTTCACACCGAT 169208 Query 47283 TTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGC 47342 |||||||||||| | |||| || | | ||| ||||||||| | ||| Sbjct 169207 TTTGCCTGTCTCCTC-----CACTC---TC-ACCTTAAG--GGACGTGCCAGCAAGCAGA 169159 Query 47343 --------GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTC 47394 ||||| | |||| ||||| |||| ||| |||||| | ||||||||| Sbjct 169158 TGATCCAGGACATCATCACCGATGCCGTTACCATCGAGCAGGAGTTCCTTACCGAGGCTC 169099 Query 47395 TGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCG 47454 | || | | | || |||||| | | | |||| |||||||||| || || | Sbjct 169098 TCCCTTGTGGTCTTCTAGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTCGTGG 169039 Query 47455 CCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCG 47514 | || || ||||||||| || || ||| | ||| | || || || |||| Sbjct 169038 CTGATCGTCTGCTCGTTGCTCTCGGTAATGAGAAGGTGTACAAGGCCACAAACCCCTTCG 168979 Query 47515 AGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCG 47574 | || ||| | ||||| || || | ||||||||||||||||||||||||||||| | || Sbjct 168978 ACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTTTTCGAGAAGCGCGTTGCCG 168919 Query 47575 AATA 47578 | || Sbjct 168918 ACTA 168915 >seq81 Length=153540 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || ||||| || | || ||| || || ||||| || || Sbjct 143846 GTCGACTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCG 143787 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| ||||| ||||||||| ||| || |||| Sbjct 143786 GCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 143727 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || || | |||||| || | ||| | || |||||||| || || Sbjct 143726 ACATTGTCGATAGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 143667 Query 127097 TTTACAAAAATCTGCATG 127114 || || || || |||||| Sbjct 143666 TTGACGAAGATTTGCATG 143649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 144128 GTCGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCA 144069 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||| || ||||| || || ||||||||| ||| || |||| Sbjct 144068 GCGAAGATAAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTAGACTTG 144009 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || || | |||||| || | ||| | || ||||| || || || Sbjct 144008 ACGTTG-TCGATAGTATCAGATGACTCGACCTCAAGGGTAATGGTCTTGCCAGTAAGGGT 143950 Query 127096 TTTTAC 127101 || || Sbjct 143949 CTTGAC 143944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495088046640