Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq17 187 2e-42
seq82 125 7e-24
seq126 116 4e-21
seq81 113 5e-20
>seq17
Length=315547
Score = 187 bits (206), Expect = 2e-42
Identities = 564/853 (66%), Gaps = 31/853 (4%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAG 132662
||||| || ||| | || ||||| ||||| || || || || ||||| || |||
Sbjct 168909 TTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCA-CCAAGAGAGATGTT 168967
Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGAC 132719
| ||| || || |||||||| | | ||||| ||| | |||| || | ||
Sbjct 168968 CTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTACACCTTCTCATTACCGAG-AG--CAAC 169024
Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAG 132779
|||||| | || ||||||||||||||||| ||| |||| | | | || | || ||
Sbjct 169025 GAGCAGACGATCAGCCACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTAG 169084
Query 132780 CAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
|||| ||| || || || ||||| || || |||||||||| || || |||||||
Sbjct 169085 AAGAC-CACAAGGGAGAGCCTCGGTAAGGAACTCCTGCTCGATGGTAACGGCATCGGTGA 169143
Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAG---- 132894
||| ||| | | | ||| | ||| | | || | ||| | ||
Sbjct 169144 TGATGTCCTGGATCATCTGCTTGCTGGCACGT--CCCTTAAGG--TGAGAGTGGAGGAGA 169199
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
|| ||||| ||| || | ||||| || | ||| ||||| |||||| ||| ||||
Sbjct 169200 CAGGCAAAATCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 169259
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|| ||||||||||| || || |||||||| || |||| ||| || || ||||||
Sbjct 169260 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 169319
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGG 133072
| ||||| || || || || || || || || | | || | || || ||| ||||
Sbjct 169320 ATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGG 169379
Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132
||||| || | ||||| || ||||| | | || ||| || || || || | |||||
Sbjct 169380 --ATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 169437
Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATA 133190
| || | | | |||| | ||| | | |||||| || ||||| || ||
Sbjct 169438 TGAAGAG--GTATGTTCTTTGGGCAGGCTCCTTGATGTAGGTATCAATGAGCAGGGAGTA 169495
Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250
| || ||||| | ||||||||| ||| || || ||||| ||||| || ||||||
Sbjct 169496 TGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGG 169555
Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310
| ||| || || ||| ||||| || || || ||||||||||| || ||| |||
Sbjct 169556 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCGGAGGC 169615
Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAGCG---CT 133366
||||| || || || | ||| |||||| |||| | ||| | |||| || |
Sbjct 169616 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGAACTGCTCATCTGTAG-TCAAACGGTTGT 169674
Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426
||||||| | |||||||| || || | ||||||| | ||||| || || ||||| |
Sbjct 169675 TCCAGTCGTGGAGATCCTTGGAAAGATCAATCTCCTCGGCTGTCCAGAAGGAGGCCTCTG 169734
Query 133427 CTTTTTTGTACAT 133439
| || ||||||||
Sbjct 169735 CCTTCTTGTACAT 169747
>seq82
Length=153091
Score = 125 bits (138), Expect = 7e-24
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 10251 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 10310
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||||||||| |
Sbjct 10311 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATTG 10370
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | || |||||| ||||||||||||||| |||
Sbjct 10371 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 10430
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || ||||| | || || |||
Sbjct 10431 GAGTCTACTCTGCACCTTGTTCTCCGT 10457
>seq126
Length=117423
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 30853 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 30912
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| |||||| | |||||
Sbjct 30913 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 30971
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||||| || || | |||||||| | |||||||||
Sbjct 30972 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 31031
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || |||| || ||
Sbjct 31032 CATCCAGAAGGAGTCTACTCTCCACCTGGTCCTCCG 31067
>seq81
Length=153540
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| ||||||||| | || |||||| | |
Sbjct 143650 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 143709
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | || || |||| ||||| || || ||||| | |||||
Sbjct 143710 GATACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 143769
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| ||||| || |||| || |||||| |||||||||
Sbjct 143770 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCTGACTACAAC 143829
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| || |||| || || | ||||| ||
Sbjct 143830 ATCCAAAAAGAGTCGACTCTCCACCTTGTGCTTCG 143864
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || || || ||||| ||||| ||| | || |||||| | | || |
Sbjct 143939 TAGTCGTCAAGACCCTTACTGGCAAGACCATTACCCTTGAGGTCGAGTCATCTGATACTA 143998
Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | |||| | || || |||| ||||| || || ||||| | ||||| |||||
Sbjct 143999 TCGACAACG-TCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGCGA 144057
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| || | ||| || || ||||| || || | ||||||||| ||||||||||||||||
Sbjct 144058 CTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAA 144117
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| || |||| || || | ||||| |||
Sbjct 144118 AAAGAGTCGACTCTCCACCTTGTGCTTCGT 144147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500166791674240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |