Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq17 187 2e-42 seq82 125 7e-24 seq126 116 4e-21 seq81 113 5e-20 >seq17 Length=315547 Score = 187 bits (206), Expect = 2e-42 Identities = 564/853 (66%), Gaps = 31/853 (4%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAG 132662 ||||| || ||| | || ||||| ||||| || || || || ||||| || ||| Sbjct 168909 TTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCA-CCAAGAGAGATGTT 168967 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGAC 132719 | ||| || || |||||||| | | ||||| ||| | |||| || | || Sbjct 168968 CTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTACACCTTCTCATTACCGAG-AG--CAAC 169024 Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAG 132779 |||||| | || ||||||||||||||||| ||| |||| | | | || | || || Sbjct 169025 GAGCAGACGATCAGCCACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTAG 169084 Query 132780 CAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 |||| ||| || || || ||||| || || |||||||||| || || ||||||| Sbjct 169085 AAGAC-CACAAGGGAGAGCCTCGGTAAGGAACTCCTGCTCGATGGTAACGGCATCGGTGA 169143 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAG---- 132894 ||| ||| | | | ||| | ||| | | || | ||| | || Sbjct 169144 TGATGTCCTGGATCATCTGCTTGCTGGCACGT--CCCTTAAGG--TGAGAGTGGAGGAGA 169199 Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||| ||| || | ||||| || | ||| ||||| |||||| ||| |||| Sbjct 169200 CAGGCAAAATCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 169259 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||||||||| || || |||||||| || |||| ||| || || |||||| Sbjct 169260 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 169319 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGG 133072 | ||||| || || || || || || || || | | || | || || ||| |||| Sbjct 169320 ATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGG 169379 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 ||||| || | ||||| || ||||| | | || ||| || || || || | ||||| Sbjct 169380 --ATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 169437 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATA 133190 | || | | | |||| | ||| | | |||||| || ||||| || || Sbjct 169438 TGAAGAG--GTATGTTCTTTGGGCAGGCTCCTTGATGTAGGTATCAATGAGCAGGGAGTA 169495 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 | || ||||| | ||||||||| ||| || || ||||| ||||| || |||||| Sbjct 169496 TGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGG 169555 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 | ||| || || ||| ||||| || || || ||||||||||| || ||| ||| Sbjct 169556 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCGGAGGC 169615 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAGCG---CT 133366 ||||| || || || | ||| |||||| |||| | ||| | |||| || | Sbjct 169616 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGAACTGCTCATCTGTAG-TCAAACGGTTGT 169674 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 ||||||| | |||||||| || || | ||||||| | ||||| || || ||||| | Sbjct 169675 TCCAGTCGTGGAGATCCTTGGAAAGATCAATCTCCTCGGCTGTCCAGAAGGAGGCCTCTG 169734 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 169735 CCTTCTTGTACAT 169747 >seq82 Length=153091 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 10251 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 10310 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| | Sbjct 10311 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGATTG 10370 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 10371 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 10430 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || ||||| | || || ||| Sbjct 10431 GAGTCTACTCTGCACCTTGTTCTCCGT 10457 >seq126 Length=117423 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 30853 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 30912 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 30913 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 30971 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 30972 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 31031 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||| || || Sbjct 31032 CATCCAGAAGGAGTCTACTCTCCACCTGGTCCTCCG 31067 >seq81 Length=153540 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 143650 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 143709 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || |||| ||||| || || ||||| | ||||| Sbjct 143710 GATACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 143769 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 143770 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCTGACTACAAC 143829 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| || |||| || || | ||||| || Sbjct 143830 ATCCAAAAAGAGTCGACTCTCCACCTTGTGCTTCG 143864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || || || ||||| ||||| ||| | || |||||| | | || | Sbjct 143939 TAGTCGTCAAGACCCTTACTGGCAAGACCATTACCCTTGAGGTCGAGTCATCTGATACTA 143998 Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | |||| | || || |||| ||||| || || ||||| | ||||| ||||| Sbjct 143999 TCGACAACG-TCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGCGA 144057 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | ||| || || ||||| || || | ||||||||| |||||||||||||||| Sbjct 144058 CTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAA 144117 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||| || || | ||||| ||| Sbjct 144118 AAAGAGTCGACTCTCCACCTTGTGCTTCGT 144147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166791674240