Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19 241 2e-58 seq17 111 2e-19 seq156 93.3 5e-14 seq398 87.8 2e-12 >seq19 Length=300009 Score = 241 bits (266), Expect = 2e-58 Identities = 566/846 (67%), Gaps = 19/846 (2%) Strand=Plus/Minus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || | |||||||||||| |||||| | |||||| | || || || ||| Sbjct 119418 GACGCAAGATTGCAAACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAC 119359 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| || || || || | ||||||||||| ||||| |||||| |||| Sbjct 119358 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 119299 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 |||||||||||| |||| | || ||||| ||||| | || |||||| || | ||| | | Sbjct 119298 TTGTAGAGCATGAAGGGGTTTCCGGTCTCTGTCTGGGCCTCGAGAATGGCGTACCAAAGC 119239 Query 106648 ATCGGCGGC-TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGG 106705 || | | | || || | | || | ||| | ||||| ||||||||| ||| || Sbjct 119238 TTCTGAGCCTTGATAGACTTGC---GACCCTTACCCTCTCTCTCGTACTTCTCGTACAGA 119182 Query 106706 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 106765 || |||||||| ||||| ||||| |||||| || || || || || | |||| Sbjct 119181 GCCTCAAACTCGTCACCGTAACAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATAAGA 119122 Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825 | ||||| || || ||| || |||||||| ||||| || || ||||| || | Sbjct 119121 GTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAGAGAGCCAGG 119062 Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 || || || | | || |||| || | ||| ||||| ||| | ||||||||||| Sbjct 119061 AACAGGTCACGAGCTCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCA 119002 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGC 106939 | || || |||||||| |||||||| |||| |||| || || ||| | | Sbjct 119001 AAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTT--GTTG- 118945 Query 106940 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 106999 ||| | || | ||||| || || ||| ||| ||||| || ||||| |||| | || Sbjct 118944 CCACCCTGGTCGACATAACGAGCAGTGTTGTTGAATACACGCAGCATGGGAACCACGCCG 118885 Query 107000 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 107059 | || ||| || || || ||| ||| | |||| | | || | || Sbjct 118884 TTGGAAGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTT 118825 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 107119 | |||||||| |||||| ||| || || ||||| | | || || | |||||| Sbjct 118824 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATA 118765 Query 107120 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 107179 |||| || ||||||||| | ||| ||||||||| ||||| ||| || || Sbjct 118764 CCGTCAATGCTGTCCTCCTTCATATCGACAAGGAAGCATGAGGACAGCTGAGGCTGAGGG 118705 Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGT 107237 ||||| || ||||| || || || | || ||| ||| | | |||| |||||| || Sbjct 118704 GTACCGGCGTTGAAAAGTGTGGGGGAAGCATGAGTGA--AGAACTTGCTGGACATGAGGT 118647 Query 107238 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAA 107297 |||||||||||||||| || || || || || |||||| | || |||||||||| Sbjct 118646 TGTATGTCTCCAAGACACGCTCGATATCATCACCCCAGATGCCAACAGCAACACGCATAA 118587 Query 107298 ACATGT 107303 ||||| Sbjct 118586 TCATGT 118581 >seq17 Length=315547 Score = 111 bits (122), Expect = 2e-19 Identities = 329/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| || ||||||||||| ||| |||| ||||| ||||| Sbjct 168915 TAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATG 168974 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 ||||| || || || | || || | | | || || | ||| ||||| Sbjct 168975 AAGTCGAAGGGGTTTGTGGCCTTGTACACCT-TCTCATTACCGAGAGCAACGAGCAGACG 169033 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | ||| |||| ||||||| ||| | |||||||| || | ||| ||| Sbjct 169034 ATCAGCCACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTAGAAGACCACA 169093 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| || || | |||| | | ||| || ||| || || | | |||| | || Sbjct 169094 AGGGAGAGCCTCGGTAAGGAACTCCTGCTCGATGGTAACGGCATCGGTGATGATGTCCTG 169153 Query 117225 GATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 ||| | | | ||| ||| ||| | || | || ||| || |||||| || Sbjct 169154 GATCATCTGCTTGCTGGCACGTCCCTTAAGGTGAGAGTGGAGGAGA--CA-GGCAAAATC 169210 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 ||| ||||||||||| ||||| || || || || |||||| || || |||||||| Sbjct 169211 GGTGTGAAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 169270 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || |||||||| | ||| | || | | || | ||| ||||||||||||||| || Sbjct 169271 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAAC 169330 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCA 117460 | ||||| |||| ||| || | || || ||| ||| | |||| | | |||| | Sbjct 169331 AGCAGCAAAGGCAACAAGACGTTGAGCAAATGAG-GAGTCCTTGTCCTGGATCCATCGAA 169389 Query 117461 TTGCCCATTTCGCCTTCTT 117479 | ||||| | |||||||| Sbjct 169390 TGGCCCAGTCAGCCTTCTT 169408 >seq156 Length=87667 Score = 93.3 bits (102), Expect = 5e-14 Identities = 165/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGA 9420 ||| | ||| || | ||||| || |||||||| || || ||| |||| |||| | Sbjct 16074 TCCAATGGCGTCGAGTTCATCGATAAAGACAATGGCAGGGGACTTGTTTTTGGCGGCAGT 16015 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 ||||| ||||| || | ||||| || ||||||||||| ||||| |||| | | Sbjct 16014 G----AAGAGCTCGCGGACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAA-CTCG 15960 Query 9481 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 | | |||| | || ||| || ||| | |||||| |||| |||||| || ||||| Sbjct 15959 CTACCAGACATGTAGAAGAAAGGAACACCGGCTTCACCGGCAACGGCTCGAGCAAGAAGC 15900 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||||| ||||| || ||| | |||||| | ||| |||| |||||| || Sbjct 15899 GTCTTACCAGTACCGGGGGGACCAACCAGGAGGACGCCCTTGGGAAGCTTGGCACC 15844 >seq398 Length=1001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 795 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 736 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 735 CCGGTAGGAGCTT 723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973712855640