Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-26 seq19 122 1e-21 seq17 113 6e-19 seq112 107 2e-17 >seq2 Length=836158 Score = 136 bits (150), Expect = 5e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| |||||||| ||||| || ||||| | || |||||| |||| |||||||||| Sbjct 13394 CCAACTATCTCGACATTAAGCCCCTTCTCGACGTCGGATGCAAGACTGTCGCCAACATGA 13335 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 13334 TCAAGGGCAAGTCGCCAGAGGAGATCCGCAAGACCTTCAACATCA 13290 >seq19 Length=300009 Score = 122 bits (134), Expect = 1e-21 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || || |||| ||| || || || |||||||| || | ||||||||| Sbjct 118939 CTGGTCGACATAACGAGCAGTGTTGTTGAATACACGCAGCATGGGAACCACGCCGTTGGA 118880 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | ||| || | ||| || ||||| Sbjct 118879 AGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTTAAGCC 118820 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| ||||||||||| || || Sbjct 118819 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTC 118760 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || || ||||| || || || || || | || || Sbjct 118759 AATGCTGTCCTCCTTCATATCGACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACC 118700 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || ||||| | || ||||| |||| | |||||| || ||| || Sbjct 118699 GGCGTTGAAAAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTGGACATGAGGTTGTATGT 118640 >seq17 Length=315547 Score = 113 bits (124), Expect = 6e-19 Identities = 178/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| ||||||||||||||||||||| | || ||||| Sbjct 168906 GCCTTTTGGTAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATG 168965 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | |||||| ||| || ||||| | || Sbjct 168966 TTCTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTACACCTTCTCATTACCGAGAGCAACG 169025 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || || || || |||||||||||||| ||||||| || ||||||||| | | Sbjct 169026 AGCAGACGATCAGCCACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTA-G 169084 Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | |||| || || | |||| | | ||||| | |||||| ||||| ||| ||| Sbjct 169085 AAGACCACAAGGGAGAGCCTCGGTAAGGAACTCCTGCTCGATGGTAACGGCATCGGTGAT 169144 Query 868930 GATCTGCCTGG 868940 ||| | ||||| Sbjct 169145 GATGT-CCTGG 169154 Score = 98.7 bits (108), Expect = 1e-14 Identities = 188/269 (70%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| || || ||||||||||| |||||||||||||| ||||||| | | Sbjct 169242 TCGTTGGAGAAGGTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAG--G 169299 Query 869261 AAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAA 869318 || || ||| ||| ||||| ||||| || || |||||| | | || || | |||| Sbjct 169300 CAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAA 169359 Query 869319 AGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCA 869375 | || ||| |||||| | |||||| || |||||||| ||||| || | | Sbjct 169360 A--TGAGGAG----TCCTTGTCCTGGATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGA 169413 Query 869376 CCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACA 869434 | || | ||||| | |||| ||||||| || | ||| ||| || ||||||| Sbjct 169414 TGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTTC-TTTGGGCAGGCTCCTTGATG 169472 Query 869435 TAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||| || || || || || || ||||| Sbjct 169473 TAGGTATCAATGAGCAGGGAGTATGTCTC 169501 >seq112 Length=127052 Score = 107 bits (118), Expect = 2e-17 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || ||||| |||||| | ||| | || ||||| ||| Sbjct 40846 GACAGCACTGGCGGTACCGTCACCTGCGTTATTCGCAATGCGCCCTCTGGTCTCGGTGAG 40905 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| || ||||| | ||||||||||||||| |||| ||||| ||| | Sbjct 40906 CCTTGCTTCGACAAGCTCCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 40965 Query 19167 AAGGGATTCGAG 19178 |||| |||||| Sbjct 40966 AAGGCCTTCGAG 40977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107060335839637