Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq19 107 2e-18
seq126 93.3 4e-14
>seq19
Length=300009
Score = 107 bits (118), Expect = 2e-18
Identities = 231/343 (67%), Gaps = 7/343 (2%)
Strand=Plus/Minus
Query 147676 CCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGG 147735
||||| | |||||| |||||||| |||||||||||| ||||| || ||||| ||
Sbjct 119208 CCCTCTCTCTCGTACTTCTCGTACAGAGCCTCAAACTCGTCACCGTAACAGTCGGCGAGA 119149
Query 147736 CCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATA 147795
|| || |||| | || ||||| || | ||| | ||| | | || || ||||
Sbjct 119148 CCAGGGCACTCGTTGGGGCACATAAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATA 119089
Query 147796 AACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCC 147855
|| ||||| || | ||| || || | || || || ||| | ||||| ||
Sbjct 119088 AAAAGATCAGGGATCCAGAGAGCCAGGAACAGGTCACGAGCTCGGACCTCCTCCTTACCG 119029
Query 147856 ATGTTGCGTTTC--AAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGA 147913
||| |||| | || ||| | | ||| ||||||||||||||| |||| |||||
Sbjct 119028 TGGTTC--TTTCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCAAGGTAGA 118971
Query 147914 CGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAA 147970
|| | ||||| ||||| || ||||||||||||| || | ||||||| |
Sbjct 118970 TAGCGAATGCACCAGGTCGCTTGTTGCCACCCTGGTCGACATAACGAGCAGTGTTGTTGA 118911
Query 147971 ACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013
| || |||| |||||| ||| |||| | | ||| ||||||||
Sbjct 118910 ATACACGCAGCATGGGAACCACGCCGTTGGAAGTACCGTTGGT 118868
>seq126
Length=117423
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||||||| ||| || ||| |||||||| ||||| | |
Sbjct 31046 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 30987
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| || || || || ||||| || || || || || || |
Sbjct 30986 AAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 30927
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || |||| | |||||| || | || | ||| || || || || || ||
Sbjct 30926 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 30867
Query 132110 ATGAAAATCTGCATGA 132125
| ||||||||||||||
Sbjct 30866 ACGAAAATCTGCATGA 30851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605474707960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |