Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq19 98.7 3e-15
seq17 93.3 1e-13
>seq19
Length=300009
Score = 98.7 bits (108), Expect = 3e-15
Identities = 215/315 (68%), Gaps = 18/315 (6%)
Strand=Plus/Plus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | ||||| ||||||||| ||||| || ||||| || || ||| ||| ||
Sbjct 118895 CCCATGCTGCGTGTATTCAACAACACTGCTCGTTATGTCGACCAGGGTGGCAACAAGCGA 118954
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT---TGAACGGTTTTTA 255097
|| || || ||| | |||||||| ||||| |||||||||||| | ||| ||| |
Sbjct 118955 CCTGGTGCATTCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTTGA---GTTCCT- 119010
Query 255098 CTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| | ||||| | ||| || | |||||| | || || ||| | | | |||
Sbjct 119011 -TGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGAGCTCGTGACCTGTTCCTGGCTC 119069
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA--GACC--TGGAGCCTC 255211
||||| | ||||| |||||| | ||||| ||||| || | | |||| ||
Sbjct 119070 TCTGGATCCCTGATCTTTTTATG--AAGCGTGT--CGAGAAGAACGGCGAATGGACTCTT 119125
Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271
||||| |||||| | || ||||| | ||||| || |||||||||||||| |||
Sbjct 119126 ATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGTTACGGTGACGAGTTTGAGGCTCTG 119185
Query 255272 TATCTGGAGTACGAG 255286
|| | ||||||||
Sbjct 119186 TACGAGAAGTACGAG 119200
>seq17
Length=315547
Score = 93.3 bits (102), Expect = 1e-13
Identities = 119/163 (73%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768
|| || || || ||||||| || || || | || || ||||| |||| ||||||||
Sbjct 169351 CGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTT-GCCTCCAT 169293
Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828
||||||| | || |||||||| || |||| ||||||||||| ||||| || |||
Sbjct 169292 CTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTC 169233
Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871
|| || |||||| | || ||| || |||||||| ||| ||
Sbjct 169232 CCGTGATGAGGGTCTTCACACCGATTTTGCCTGTCTCCTCCAC 169190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588316443116645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |