Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19 226 4e-54 seq17 114 2e-20 seq398 87.8 2e-12 seq156 82.4 1e-10 >seq19 Length=300009 Score = 226 bits (250), Expect = 4e-54 Identities = 567/853 (66%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || || | |||||||||||| |||||| | |||||| | || || || || Sbjct 119418 GACGCAAGATTGCAAACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAC 119359 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||||| || || || || | ||||||||||| ||||| |||||| |||| Sbjct 119358 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 119299 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420 |||||||||||| |||| | || ||||| ||||| | | |||||| || | ||||| | Sbjct 119298 TTGTAGAGCATGAAGGGGTTTCCGGTCTCTGTCTGGGCCTCGAGAATGGCGTACCAAAGC 119239 Query 111421 ATCGGCGGC-TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGG 111478 || | | | || || | | || | ||| | ||||| ||||||||| ||| || Sbjct 119238 TTCTGAGCCTTGATAGACTTGC---GACCCTTACCCTCTCTCTCGTACTTCTCGTACAGA 119182 Query 111479 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 111538 || |||||||| ||||| ||||| |||||| || || || || || | |||| Sbjct 119181 GCCTCAAACTCGTCACCGTAACAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATAAGA 119122 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||||| || | ||| || |||||||| ||||| || || ||||| || | Sbjct 119121 GTCCATTCGCCGTTCTTCTCGACACGCTTCATAAAAAGATCAGGGATCCAGAGAGCCAGG 119062 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || || || | | || |||| || | ||| ||||| ||| | ||||||||||| Sbjct 119061 AACAGGTCACGAGCTCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCA 119002 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGC 111712 | || || |||||||| |||||||| |||| |||| || || ||| | | Sbjct 119001 AAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAATGCACCAGGTCGCTT--GTTG- 118945 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| | || | ||||| || || ||| ||| ||||| || ||||| |||| | || Sbjct 118944 CCACCCTGGTCGACATAACGAGCAGTGTTGTTGAATACACGCAGCATGGGAACCACGCCG 118885 Query 111773 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 111832 | || ||| || || || ||| ||| | |||| | | || | || Sbjct 118884 TTGGAAGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATTCGGTGAACGTTT 118825 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | |||||||| |||||| ||| || || ||||| | | || || | |||||| Sbjct 118824 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATA 118765 Query 111893 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 111952 |||| || ||||||||| | ||| ||||||||| ||||| ||| || || Sbjct 118764 CCGTCAATGCTGTCCTCCTTCATATCGACAAGGAAGCATGAGGACAGCTGAGGCTGAGGG 118705 Query 111953 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGT 112010 ||||| || ||||| || || || | || ||| ||| | | |||| |||||| || Sbjct 118704 GTACCGGCGTTGAAAAGTGTGGGGGAAGCATGAGTGA--AGAACTTGCTGGACATGAGGT 118647 Query 112011 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGA 112070 |||||||||||||||| || || || || || |||||| | || || ||||| | Sbjct 118646 TGTATGTCTCCAAGACACGCTCGATATCATCACCCCAGATGCCAACAGCAACACGCATAA 118587 Query 112071 ACATGTACTGTGG 112083 ||||| ||| || Sbjct 118586 TCATGTGCTGAGG 118574 >seq17 Length=315547 Score = 114 bits (126), Expect = 2e-20 Identities = 524/814 (64%), Gaps = 19/814 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| || ||||||||||| ||| |||| ||||| ||||| Sbjct 168915 TAGTCGGCAACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATG 168974 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 ||||| || || || | || || | | | || || | ||| ||||| Sbjct 168975 AAGTCGAAGGGGTTTGTGGCCTTGTACACCT-TCTCATTACCGAGAGCAACGAGCAGACG 169033 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | ||| |||| ||||||| ||| | |||||||| || | || ||| Sbjct 169034 ATCAGCCACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTAGAAGACCACA 169093 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| || || | |||| | | ||| || ||| || || | | |||| | || Sbjct 169094 AGGGAGAGCCTCGGTAAGGAACTCCTGCTCGATGGTAACGGCATCGGTGATGATGTCCTG 169153 Query 122610 GATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 ||| | | | ||| ||| ||| | || | || ||| || |||||| || Sbjct 169154 GATCATCTGCTTGCTGGCACGTCCCTTAAGGTGAGAGTGGAGGAGA--CA-GGCAAAATC 169210 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 ||| ||||||||||| ||||| || || || || |||||| ||||| |||||||| Sbjct 169211 GGTGTGAAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 169270 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||| | ||| | || | | || | ||| ||||||||||||||| || Sbjct 169271 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAAC 169330 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCA 122845 | ||||| |||| ||| |||| || || ||| ||| | ||| | | | |||| | Sbjct 169331 AGCAGCAAAGGCAACAAGACGTTGAGCAAATGAG-GAGTCCTTGTCCTGGATCCATCGAA 169389 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACT-GC 122904 | ||||| | |||||||| || || || | ||| | | ||| | || | | Sbjct 169390 TGGCCCAGTCAGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATG 169449 Query 122905 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGA 122964 |||||| | | ||||| ||||| | ||||| | || ||||| || || Sbjct 169450 TTCTTTGGGCAGGC-TCCTTGATGTAGGTATCAATGAGCAGGGAGTATGTCTCAGAGTGG 169508 Query 122965 ACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTC 123023 | | | ||| ||| | || | ||||||| | || || ||| ||||| ||||| Sbjct 169509 ATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTC 169567 Query 123024 ATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATG 123082 |||| ||| | | | | ||||| || || |||||||| |||| ||||| | Sbjct 169568 -GCCGCTGAATCGCTCAACAAGGTTCTCGTTGACGATACCATCGGAGGCAGCGAAGAAAG 169626 Query 123083 CCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAA 123139 | || |||| ||||| || |||| | | ||| || | |||||||||| | Sbjct 169627 CAAGAATGTGGGAGATGAAGAACTGCTCATCTGTAGTCAAACGGTTGTTCCAGTCGTGGA 169686 Query 123140 GATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||| ||||| | ||||| || || || ||||| Sbjct 169687 GATCCTTGGAAAGATCAATCTCCTCGGCTGTCCA 169720 >seq398 Length=1001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 795 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 736 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 735 CCGGTAGGAGCTT 723 >seq156 Length=87667 Score = 82.4 bits (90), Expect = 1e-10 Identities = 193/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 11639 TCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGATTTCAAAGAGATCGCG 11694 ||||| || |||||||| || || ||| |||| |||| | ||||| ||||| Sbjct 16058 TCATCGATAAAGACAATGGCAGGGGACTTGTTTTTGGCGGCAGTG----AAGAGCTCGCG 16003 Query 11695 AACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGAT 11754 || | |||||||| ||||||||||| ||||| |||| | |||| | || Sbjct 16002 GACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAACTCGCTACCAGACATGTAGAA 15943 Query 11755 GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || ||| | |||||| || | |||||| || || || ||||| || ||||| || Sbjct 15942 GAAAGGAACACCGGCTTCACCGGCAACGGCTCGAGCAAGAAGCGTCTTACCAGTACCGGG 15883 Query 11815 CTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACTTC-CAAAATATCTCTCG 11872 ||| | || ||| |||| ||| | ||||||||| | || | ||| |||| | Sbjct 15882 GGGACCAACCAGGAGGACGCCCTTGGGAAGCTTGGCACCGAGGTCGCTAAACTTCTC-AG 15824 Query 11873 GGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 |||| ||| | ||| || || | || | ||||| || ||||| Sbjct 15823 GGTT-CTTCAAAAACTCGACGACTTCCTGGAGTTCTTCCTTGGC 15781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024455765600