Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19 233 2e-56 seq18 118 1e-21 seq17 109 6e-19 >seq19 Length=300009 Score = 233 bits (258), Expect = 2e-56 Identities = 507/753 (67%), Gaps = 18/753 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | || ||| ||||| || | ||||||| ||||| ||| || Sbjct 118589 ATGCGTGTTGCTGTTGGCATCTGGGGTGATGATATCGAGCGTGTCTTGGAGACATACAAC 118648 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | |||| ||| || || || | || || || |||||||| ||||| | Sbjct 118649 CTCATGTCCAGCAAGTTCTTCACTCATGCTTCCCCCACACTTTTCAACGCCGGTACCCCT 118708 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || |||||| |||| |||||||| || | |||||||| ||| || ||||| ||| Sbjct 118709 CAGCCTCAGCTGTCCTCATGCTTCCTTGTCGATATGAAGGAGGACAGCATTGACGGTATC 118768 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| |||||| || |||||| | | |||||||| || | || Sbjct 118769 TACGACACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTAAAC 118828 Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | || | || ||||||| | ||| | || || || ||||| || | | Sbjct 118829 -GTTC-ACCGAATCCGTGCCACTGGCTCTTACATTGCCGGTACCAACGGTACTTCCAACG 118886 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | | || || ||||| || || ||||||||||| || || || ||| |||||||||| Sbjct 118887 GCGTGGTTCCCATGCTGCGTGTATTCAACAACACTGCTCGTTATGTCGACCAGGGTGGCA 118946 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| |||||||| ||||| |||||||||||| | | |||| Sbjct 118947 ACAAGCGACCTGGTGCATTCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTTGAGT 119006 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || ||| | || ||| | || ||||||||||| | Sbjct 119007 TCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGAGCTCGTGACCTGTTCCTGG 119066 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 |||| ||||| || || || || ||| | || |||||| ||| || ||| || | Sbjct 119067 CTCTCTGGATCCCTGATCTTTTTATGAAGCGTGTCGAGAAGAACGGCGAATGGACTCTTA 119126 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 ||||||| ||||||||||| || ||| | | ||| |||||||| |||||| | | || Sbjct 119127 TGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGT-TACGGTGACGAGTTTGAGGCTCTG 119185 Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || || |||| | | | |||| ||| ||| ||||||| | || Sbjct 119186 TACGAGAAGTACGAGAGAGAGGGTAAGGGTCGC------AAGTCTATCAAGGCTCAGAAG 119239 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || || ||| || |||| ||||| |||| || | |||| ||||||| Sbjct 119240 CTTTGGTACGCCATTCTCGAGGCCCAGACAGAGACCGGAAACCCCTTCATGCTCTACAAG 119299 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||| ||||||||||| |||||| Sbjct 119300 GATCACTGCAACCGCAAGAGCAACCAAAAGAAC 119332 >seq18 Length=305043 Score = 118 bits (130), Expect = 1e-21 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 |||||||| | ||||||| || |||||||| ||||| ||||| || | |||||| Sbjct 165970 CGAGTGAAGGTATAACGAGGACTAGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 165911 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | |||||| || |||| | ||| | |||||| | || | ||||| ||||| | Sbjct 165910 TTTCCACTAGGTTCCAGGCAGTTGATGTTGTTTGAACCAATGAAGTTCTGAGCAAGACCA 165851 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 | ||| || ||| || | ||||| ||||| || ||||| || || | ||| || Sbjct 165850 ATAATGGTTTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTTTGTTCGGACACATAA 165791 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 || |||| | | | |||||| ||||| | | ||| |||||| ||| || || ||| Sbjct 165790 CCTGCCAATTCAACAACCTTCTTGTCTTTGATTATGTTTCTCTTGAAGCACGCGTAGATC 165731 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 ||||||||||||| || || | |||||| Sbjct 165730 ACCTTGCGCTGACCGGGTTTAAACCCATCC 165701 Score = 100 bits (110), Expect = 3e-16 Identities = 204/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| || |||||| | || || | || || ||||| |||||||| || || | || Sbjct 165974 CAATCGAGTGAAGGTATAACGAGGACTAGCAGCATCAGAACCACCTGCAAGTCGAGAACC 165915 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | |||| || || ||| ||||| |||||| | || | ||| |||||||| | Sbjct 165914 GAAGTTTCCACTAGGTTCCAGGCAGTTGATGTTGTTTGAACCAATGAAGTTCTGAGCAAG 165855 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | | ||| || || || | |||||||||||| || ||||| || || | | Sbjct 165854 ACCAATAATGGTTTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTTTGTTCGGACAC 165795 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || ||||| | | |||||| |||| | | | ||| |||||| || ||||| Sbjct 165794 ATAACCTGCCAATTCAACAACCTTCTTGTCTTTGATTATGTTTCTCTTGAAGCACGCGTA 165735 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGAT 152321 |||||||||||||| ||||| || || |||| || ||||| || ||| || | Sbjct 165734 GATCACCTTGCGCTGACCGGGTTTAAACCCATCCAGAACAGACGGAATAGATCGCATGTT 165675 Query 152322 GTC 152324 ||| Sbjct 165674 GTC 165672 >seq17 Length=315547 Score = 109 bits (120), Expect = 6e-19 Identities = 530/820 (65%), Gaps = 46/820 (6%) Strand=Plus/Plus Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531 || ||||| || |||||||||||||| || | | |||||||||||||| ||||||| Sbjct 168924 ACGCGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGAAG 168983 Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGG---CGATCCGCC 74588 ||||| | || ||| | |||||| | | || | ||| ||||| ||| Sbjct 168984 GGGTTTGTGGCCTTGTACAC---CTTCTCATTACCGAGAGCAACGAGCAGACGATCAGCC 169040 Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648 || || | ||||||||| |||| | | |||||| | || || || || Sbjct 169041 ACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCTAGAAGACCACAAGGGAGA 169100 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCTTGTGAATG- 74705 |||||||| | ||||| ||| | | | || ||| || | || | || || Sbjct 169101 GCCTCGGTAAGGAACTCCTGCTCGA--TGGTAACGGCATCGGTGATGATGTCCTGGATCA 169158 Query 74706 TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGA 74762 ||| ||| ||||| | || | |||||||||| || | || |||||| || | Sbjct 169159 TCTGCTTGCT--GGCACGTC-CCTTAAGGTGAGAGTGGAGGAGACA-GGCAAAATC--GG 169212 Query 74763 TGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTC 74820 || || || ||||| | | || | || || || || | || |||||||| || | Sbjct 169213 TGTGAAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGGC 169272 Query 74821 CACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACAC 74880 |||||||||| | ||| ||||||| |||| ||| ||||||||||| || || ||| Sbjct 169273 CACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAG 169332 Query 74881 ACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCAT---CGGAAGTCATCCAAGTC 74933 |||||||| ||||| ||||| || || | || | | | | | |||| || Sbjct 169333 CAGCAAAGGCAACAAGACGTTGAGCAAATGAGGAGTCCTTGTCCTGGATCCATCGAA--- 169389 Query 74934 TGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 || ||||| ||||| ||| || | || ||| | ||| || | || | ||||||| Sbjct 169390 TG-GCCCAGTCAGC-CTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTA 169447 Query 74993 TGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAA 75050 || |||| | | || ||||||| | | ||||| | || ||||| ||||| || Sbjct 169448 TG--TTCTTTGGGCAGGCTCCTTGATGTAGGTATCAATGAGCAGGGAGTATGTCTCAGAG 169505 Query 75051 TGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 || || ||| | | |||| | ||||||| | || ||||| | ||||| || Sbjct 169506 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGGACC 169565 Query 75111 T--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 | || |||| ||| | | ||||| ||||||| || || ||||| ||||| | Sbjct 169566 TCGCCGCTGAATCGCTCA--ACAAGGTTCTCGTTGACGATACCATCGGAGGCAGCGAAGA 169623 Query 75169 AAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCT 75225 |||| || | ||| ||| ||||||| ||| | | |||| ||| || | Sbjct 169624 AAGCAAGAATGTGGGAGATGAAGAACTGCTCATCTGTAGTCAAACGGTTGTTCCAGTCGT 169683 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || ||| | | ||||||||||||| | |||||||| Sbjct 169684 GGAGATCCTTGGAAAGATCAATCTCCTCGGCTGTCCAGAA 169723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209426567800