Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq126 163 6e-35 seq82 161 2e-34 seq81 159 7e-34 seq3 87.8 4e-12 seq351 86.0 1e-11 >seq126 Length=117423 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | || || || |||||||||||||| Sbjct 31080 ACCACCACGGAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 31021 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 31020 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 30961 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 30960 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 30901 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 30900 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 30853 >seq82 Length=153091 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 10469 ACCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 10410 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || |||||||| || |||||||| || Sbjct 10409 GAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGG 10350 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| |||||||| | ||||| Sbjct 10349 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGAC 10290 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 10289 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 10251 >seq81 Length=153540 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || || || | || |||||||||||||||||||||| Sbjct 143877 ACCACCACGAAGGCGAAGCACAAGGTGGAGAGTCGACTCTTTTTGGATGTTGTAGTCAGA 143818 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||| || ||||| || || |||||| || Sbjct 143817 GAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 143758 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| | || || | |||||||| || || | ||||| Sbjct 143757 AATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCAGATGACTCGAC 143698 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 143697 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 143650 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || |||||||||||||||||||| | Sbjct 144159 ACCACCACGAAGACGAAGCACAAGGTGGAGAGTCGACTCTTTTTGGATGTTGTAGTCGGA 144100 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||| | || || |||||| || Sbjct 144099 GAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCAGGAGG 144040 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| |||||||| | || ||| | |||||||| || || | ||||| Sbjct 144039 AATACCTTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATAGTATCAGATGACTCGAC 143980 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 || || || || ||||| || || | ||||| |||| || Sbjct 143979 CTCAAGGGTAATGGTCTTGCCAGTAAGGGTCTTGACGACTA 143939 >seq3 Length=622283 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| || |||| | || |||||||||| || ||||| | | Sbjct 506689 ACACCACCCTCGAACTTCTTGAGAGCCTTGGACAAGGCACCGAGAGAGTCACGGTCAAGA 506748 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||| ||||| ||||||||||| | |||||| | ||||| ||||| || | | Sbjct 506749 TAGTTGGTAGGCTCGTCAAGAACGATAAGATGGGGTCGCTGCCA-AGAGCAAGCAGCCAA 506807 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835 || ||| | || ||||| ||||| ||||| || ||||| |||| Sbjct 506808 GACAGTCTTGACACGCTGACCACCGGACAGACCACGCATACGAGAGTGAG 506857 >seq351 Length=2184 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/151 (75%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 109937 TTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGTGA 109996 |||||||| |||||||||||| || |||||||| | || |||||| | ||||| Sbjct 1049 TTGCAACACTGTCAAATTGCGGGGACGTCCTAAAGCTTTTGCGACCAAGCAT--TTGTGG 992 Query 109997 AAGCATCAGC-TGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCAC 110053 || || || |||||||| || || || ||||||||||| | | || | |||| || Sbjct 991 AAACACAAGTGTGGCCGAGTTAATAGCCCT-GGGTATGGTAATACTGCAAAAGATGTTAC 933 Query 110054 AATGGGCAATCCGCAGCCAAGCCTCTAAAGG 110084 ||||| |||||||||||||| | |||| || Sbjct 932 AATGGATAATCCGCAGCCAAGTC-CTAAGGG 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046726311696494