Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 291 8e-74 seq12 149 6e-31 seq17 129 6e-25 seq13 123 3e-23 >seq10 Length=5928648 Score = 291 bits (322), Expect = 8e-74 Identities = 556/806 (69%), Gaps = 21/806 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||| Sbjct 4471214 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATCTG 4471155 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | | |||||| |||||| Sbjct 4471154 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACCTCCGACGAGCAGTTCTTCATCTC 4471096 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| || |||||| |||||||||||||||||||| || || ||||| Sbjct 4471095 TCACATTCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTTGTTGAGCG 4471036 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || ||||||||||| || |||||| || Sbjct 4471035 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 4470976 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| || | | || ||| Sbjct 4470975 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTATATCAAGGAGC-CTT 4470917 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || ||| || | | | | |||||||| ||||| || || ||| || |||||| Sbjct 4470916 CCCAGC-GAACCTACCTCT--TCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGG 4470860 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | || |||||| | || || | |||| | | |||| || || | Sbjct 4470859 CCGACTGGGCCATCCGATGGATCCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTG 4470800 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGT---TTCGCCGCCATATTTTGGC 117104 ||||||| ||||||||||| |||| |||| | | || || || |||| || |||| Sbjct 4470799 CCTTCGCTGCCGTCGAGGGTATCTT--TTTCAG-CGGTGCCTTTGCTTCCATCTTCTGGC 4470743 Query 117105 TCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACG 117164 ||||||| || || ||||||||||| ||||| ||| |||||| | || || | || | Sbjct 4470742 TCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCTAACGAGTTAATATCTCGTGATG 4470683 Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 ||||||| || |||||||||||| | || | || | | || | ||| Sbjct 4470682 AGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGCCGTGCTAGCA 4470623 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | | | || ||| ||| |||| || || ||| |||| |||||| ||||| || | Sbjct 4470622 AGCAGGTCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTG 4470563 Query 117285 AAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 | || || || |||| || || || | || ||| ||| ||| ||||||||| Sbjct 4470562 AGGCTCT-CCCCTGCGCCCTTCTCGGCATGAACGCCGATCTCATGAAGCAGTACATCGAG 4470504 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 |||||||| ||| | || ||| ||| || | | || ||| |||||| | ||||| Sbjct 4470503 TTCGTCGCTGACCGTCTTCTGGTCGCCCTCGGCAACGAGAAGGTCTACAAGTCCGCCAAC 4470444 Query 117404 CCGCTGGACTTTATGAACCTCATCTC 117429 || | ||||| ||| | |||||| Sbjct 4470443 CCCTTCGACTTCATGGAGAACATCTC 4470418 >seq12 Length=8749402 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || ||||||||| | || || || | Sbjct 4927205 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCT 4927264 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 4927265 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 4927323 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 4927324 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 4927383 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || | ||| || | || || Sbjct 4927384 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGG 4927434 >seq17 Length=2611553 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 1259301 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 1259242 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||| ||||| ||||| Sbjct 1259241 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACTG 1259182 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || || ||| ||||||||||||||||||| Sbjct 1259181 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1259122 Query 40879 G 40879 | Sbjct 1259121 G 1259121 >seq13 Length=4347623 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| | || || ||| | || Sbjct 2711795 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAATCATCC 2711854 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || || || || || | ||||| Sbjct 2711855 GACACGATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCA 2711913 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| ||| ||||| || || || |||| || || |||| ||||||||| Sbjct 2711914 ACAGCGACTTATCTTCGCTGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTACAA 2711973 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || ||||| || || Sbjct 2711974 CATCCAGAAGGAGTCTACTCTGCACCTGGT 2712003 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| || |||||| |||| || || | |||||| | Sbjct 2711577 TCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 2711636 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| ||| || | ||||| |||||||| || | || ||||| || || Sbjct 2711637 ACAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGCCTG 2711695 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | ||||||||| |||||||||||| |||||| Sbjct 2711696 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAG 2711755 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 2711756 GAGTCCACCCTCCACCTCGT 2711775 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 |||||||| ||||||||| |||| || || || | || | | | | | ||||| Sbjct 2711313 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 2711372 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||||||||| | || ||||| || || || | ||| ||||| Sbjct 2711373 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 2711432 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | |||||||| ||| ||||| |||||||||||| |||| || ||| Sbjct 2711433 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAATATCCAGAAGGAGTCCACTCTCCAT 2711492 Query 40894 CTAGT 40898 || || Sbjct 2711493 CTCGT 2711497 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || || ||||| | || ||||| ||| | Sbjct 2712023 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACTCTGGAGGTCGAGTCCAGC 2712082 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||| || |||| ||||| ||||| |||||| | |||||| Sbjct 2712083 GATACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 2712142 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 2712143 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTCTCTGACTACAAC 2712202 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || ||||| || ||| Sbjct 2712203 ATTCAGAAGGAATCGACCCTGCACCTTGTG 2712232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920