Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq13 122 6e-23 seq12 118 7e-22 seq17 93.3 3e-14 >seq13 Length=4347623 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| ||||| | || ||| ||||| ||||||||||| || Sbjct 2712249 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 2712190 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || || |||||||||||| ||| Sbjct 2712189 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGG 2712130 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | |||| | || ||||| Sbjct 2712129 ATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATAGTATCGCTGGACTCGACC 2712070 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || || |||||||| || |||||||||||||| Sbjct 2712069 TCCAGAGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2712023 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG--G 34220 || || ||||| | || |||||||| | |||| || ||||| |||||||||||| | Sbjct 2712021 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 2711962 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || | ||| |||| || | |||||||| ||||| || || ||||| ||||| | Sbjct 2711961 AGAGTT--CGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAG 2711904 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||| || ||||| ||| | | | |||| |||| ||||| | Sbjct 2711903 GAATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATCGTGTCGGATGATTCCA 2711844 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| || || |||||||| || || ||||| ||||| Sbjct 2711843 CCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 >seq12 Length=8749402 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||||||| | || || || ||||| |||||||||||| | Sbjct 4927434 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 4927375 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || ||||| |||||||||||| ||| Sbjct 4927374 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 4927315 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 4927314 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 4927255 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || || || || || || |||||||||||| Sbjct 4927254 TCAAGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATC 4927207 >seq17 Length=2611553 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| | || || | ||||||||| ||||| || Sbjct 1259123 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 1259182 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || |||||||| || ||| | || ||||||||| ||||| ||| | || | | Sbjct 1259183 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 1259242 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | || | || ||||| || | |||||||| ||||| || || || ||||| || Sbjct 1259243 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1259301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071933063520