Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq11 120 7e-22 seq1 98.7 2e-15 >seq11 Length=4934405 Score = 120 bits (132), Expect = 7e-22 Identities = 282/418 (67%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||| | | || || | ||| | | ||||| ||||| || Sbjct 3281333 CTAGACTCCGCCATTGTCTATGACCGTGACTTCCAATACCAATACTTTGGCTTCAAGACC 3281274 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || ||| ||| || |||||||| |||||||||||||| || || || ||||||||| Sbjct 3281273 CTTGAGCGATCTTACCTCCTCAAGATTGATGGCAAGATTGTTGAGCGCCCCCAGCACATG 3281214 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATG---ACATAGAGAGCGTGCTCGAGACG 248958 | ||||| ||||||||||| || | || || |||| ||| | || |||||||| Sbjct 3281213 ATCATGCGTGTGGCTGTCGGCAT---CTGGGGTGACAACATTGAGCGTGTCCTCGAGACT 3281157 Query 248959 TACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017 |||| | ||| | | | | | | || || ||| | || || |||||||| || || Sbjct 3281156 TACAACCTCATGTCGAGCAAG-TTCTTCACTCACGCCTCCCCCACCCTCTTCAATGCGGG 3281098 Query 249018 TACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077 |||| | | ||||| ||| ||||| ||| | | |||| | || ||| | | || Sbjct 3281097 TACCCCCCAGCCCCAGCTCTCCTCATGCTTCCTTGTCGACATGAAGGAGGACAGTATTGA 3281038 Query 249078 CGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAAT 249134 || |||||||| || || | |||| || | |||||| || | || || || || Sbjct 3281037 GGGTATTTATGATACTCTCA---AGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTAT 3280981 Query 249135 CGGTCTCTCCGT-CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 || || ||| | || | ||||| || | ||||| |||||| ||||| || || Sbjct 3280980 TGGCCTGAACGTGCACCGA-ATCCGTGCCACTGGTTCTTACATCGCCGGTACCAACGG 3280924 Score = 93.3 bits (102), Expect = 9e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| ||||| || || ||||||||||| |||||||| || || || || | | | Sbjct 3061724 TCTACGGCCCTCCAGGCACCGGCAAGACGTCCACCATCCTCGCCCTCGCACGTCGCATTT 3061783 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| | |||||| | || ||||||||||||||||| || || || || || Sbjct 3061784 ATGGCGCCGCAAACATGCGCCAGATGGTGCTCGAGCTGAACGCCTCAGATGACCGTGGTA 3061843 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | ||||| || ||||| ||||||| ||||| Sbjct 3061844 TCGACGTTGTGCGCGAGCAGATCAAAACTTT 3061874 >seq1 Length=6466812 Score = 98.7 bits (108), Expect = 2e-15 Identities = 260/395 (66%), Gaps = 34/395 (9%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCC--G 254068 |||||||| | || || || || |||||||| || || || |||| |||||||| | Sbjct 4342416 TGCTTTTCTATGGCCCCCCAGGTACAGGCAAAACCTCGACTGTCCTTGCGCTGGCGAAGG 4342475 Query 254069 AACCCTGTTGGGCGAGGGGAACATGAGAGAG---CGCGTGCTCGAGCTGAACGCTTCTGA 254125 ||| ||| ||| | | |||| || || || |||||||| ||||| || || Sbjct 4342476 AAC--TGTACGGCCCCG---AAATGATCAAGTCCCGAGTACTCGAGCTCAACGCCTCCGA 4342530 Query 254126 CGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTT- 254184 ||| || || | | ||||||| || ||| |||||| ||| || ||| | ||| Sbjct 4342531 CGAGCGTGGCATCTCCATCGTCCGAGAAAAGGTCAAGAATTTTGCCCGCATG-CAATTGA 4342589 Query 254185 -----------CGTCGTTCCAA---------CCCGGCTGTCCGCCTTTCAAGCTCGTGAT 254224 | | | | ||| ||| ||| || ||||||||| || | || Sbjct 4342590 CCAACCCGAGCCCTGGATACAAAGACAAATACCC--CTGCCCCCCTTTCAAGATCATCAT 4342647 Query 254225 CCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA 254284 || |||||||| ||| ||||||| || || ||| ||| || || |||| ||||| Sbjct 4342648 TCTTGACGAGGCCGACTCCATGACACAAGATGCACAGAGCGCACTGCGAAGAACTATGGA 4342707 Query 254285 GACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGC 254344 ||| | | | || ||||| ||| || | ||||||||||| | ||||||| Sbjct 4342708 GACATATAGCAAGATCACCCGTTTCTGCTTGATTTGCAACTACGTCACTCGTATCATCGA 4342767 Query 254345 CCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||| ||| ||| ||| |||||||||||||| Sbjct 4342768 CCCGCTCGCTAGTCGATGCAGCAAGTTTCGATTCA 4342802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766166120256